| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00016916m |
| Family | GH51 |
| Protein Properties | Length: 433 Molecular Weight: 48053.8 Isoelectric Point: 5.1034 |
| Chromosome | Chromosome/Scaffold: 061827 Start: 988 End: 4449 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 9 | 423 | 0 |
| QGHGFRTELISMLLDLKPRFLRFPGGCFVEGDWLRNAFRWRESIGPWEERPGHFGDVWHYWTDDSLGYYEFLQLAEDLGAAPIWVFNNGVSHNDEVDTVA IAPFVKDVLDSLEFARGSANSTWGSVRASMGHPEPFPVKYVAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSKPLDHPADLYDFHVYTDSK TLFNMRSTFDRTSRSGPKAFVSEYAVWRSDAGRGSLLASLAEAAFLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTLFRES SGAMIHPIKISSNYSGSLAASAITWQDSENSFLRVKVVNFGSDAVSLTISTSGLQASVNALGSTATVLTSGNVMDENSFSNPNKVVPVKSELSNAAEQMQ VTLAPHSFSSFDLAL | |||
| Full Sequence |
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| Protein Sequence Length: 433 Download |
| YSVIIMHTQG HGFRTELISM LLDLKPRFLR FPGGCFVEGD WLRNAFRWRE SIGPWEERPG 60 HFGDVWHYWT DDSLGYYEFL QLAEDLGAAP IWVFNNGVSH NDEVDTVAIA PFVKDVLDSL 120 EFARGSANST WGSVRASMGH PEPFPVKYVA IGNEDCGKKF YRGNYLKFYN AIRQAYPDIQ 180 MISNCDGSSK PLDHPADLYD FHVYTDSKTL FNMRSTFDRT SRSGPKAFVS EYAVWRSDAG 240 RGSLLASLAE AAFLTGLEKN SDIVQMASYA PLFVNDNDQT WNPDAIVFNS WQHYGTPSYW 300 MQTLFRESSG AMIHPIKISS NYSGSLAASA ITWQDSENSF LRVKVVNFGS DAVSLTISTS 360 GLQASVNALG STATVLTSGN VMDENSFSNP NKVVPVKSEL SNAAEQMQVT LAPHSFSSFD 420 LALAQSKLIA EM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 2.0e-36 | 12 | 417 | 482 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 6.0e-38 | 230 | 415 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 7.0e-52 | 230 | 415 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF86832.2 | 0 | 9 | 432 | 7 | 430 | unknown [Zea mays] |
| GenBank | ACN27961.1 | 0 | 9 | 432 | 233 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 9 | 432 | 257 | 680 | unknown [Zea mays] |
| RefSeq | NP_001148977.1 | 0 | 9 | 432 | 257 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 9 | 432 | 233 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 3e-26 | 11 | 423 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 3e-26 | 11 | 423 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 3e-26 | 11 | 423 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 3e-26 | 11 | 423 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 3e-26 | 11 | 423 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT048615 | 348 | 57 | 403 | 0 |
| GT046204 | 336 | 9 | 344 | 0 |
| HO852683 | 426 | 12 | 433 | 0 |
| JG884880 | 286 | 148 | 433 | 0 |
| JG968114 | 277 | 140 | 416 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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