Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016919m |
Family | GH28 |
Protein Properties | Length: 518 Molecular Weight: 54286.4 Isoelectric Point: 10.1832 |
Chromosome | Chromosome/Scaffold: 064633 Start: 2 End: 2130 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 256 | 517 | 0 |
KAACSSSSSGATLLVPPDGVFTITSTIFAGPCKPALTFQIDGVLMPPDGPASWPAADSRRQWLVFYRADGVTLAGKGTIEGNGEEWWDLPCKPHRGPNGS TLPGPCDSPAVSKLSPSDHLDLALFLFFFFLIRFVLSNDVTVRGLRIENSPQFHLKFDGCARVLVDGLFVSSPAFSPNTDGVHVENTTAVQILNSRIYNG DDCVSIGAGCSDVHIENITCGHGHGISIGSLGVHNTRACVSNVTVRNARIVDSDNGLRIKTW |
Full Sequence |
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Protein Sequence Length: 518 Download |
LCCHPVAADA SRALHYHRKH RRHHSRHHRA ENGGGHIALP PAPALPPDVD GDSPAEPPGS 60 PPDAAKQPPN KTTEPRSRAK PPSPAPARAP SHSHATKPPS LSPARPPSLS PRKPPSLSPS 120 HAKPAPCTPV KSKPPKPSPA RPPRPSTASP PAAHPPAKTS TRAPAQTPRP SPAKPQPPAP 180 STTVKPPPHA QAKPPTPSPA QPPRPPALPP AVSKPIPPPA PAPAKDSSSA VFDVRAFGAS 240 GNASGDDTRA FRAAWKAACS SSSSGATLLV PPDGVFTITS TIFAGPCKPA LTFQIDGVLM 300 PPDGPASWPA ADSRRQWLVF YRADGVTLAG KGTIEGNGEE WWDLPCKPHR GPNGSTLPGP 360 CDSPAVSKLS PSDHLDLALF LFFFFLIRFV LSNDVTVRGL RIENSPQFHL KFDGCARVLV 420 DGLFVSSPAF SPNTDGVHVE NTTAVQILNS RIYNGDDCVS IGAGCSDVHI ENITCGHGHG 480 ISIGSLGVHN TRACVSNVTV RNARIVDSDN GLRIKTWQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-35 | 232 | 518 | 288 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-36 | 232 | 518 | 289 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-42 | 234 | 518 | 289 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-47 | 268 | 518 | 251 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-50 | 231 | 518 | 288 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC70551.1 | 0 | 229 | 518 | 343 | 612 | hypothetical protein OsI_01700 [Oryza sativa Indica Group] |
RefSeq | NP_001042921.1 | 0 | 229 | 518 | 343 | 612 | Os01g0329300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132604.2 | 0 | 207 | 518 | 69 | 369 | hypothetical protein LOC100194076 [Zea mays] |
RefSeq | XP_002455572.1 | 0 | 6 | 518 | 10 | 553 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
RefSeq | XP_002455574.1 | 0 | 181 | 518 | 66 | 415 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.00000000000006 | 315 | 516 | 56 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000006 | 315 | 516 | 56 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000006 | 315 | 516 | 56 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000006 | 315 | 516 | 56 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.00000000000006 | 315 | 516 | 56 | 234 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DN146860 | 219 | 279 | 497 | 0 |
DW479564 | 280 | 239 | 518 | 0 |
DY277859 | 288 | 231 | 518 | 0 |
EY254539 | 212 | 307 | 518 | 0 |
GR169784 | 251 | 268 | 518 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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