Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016955m |
Family | GH17 |
Protein Properties | Length: 301 Molecular Weight: 31367.3 Isoelectric Point: 5.9016 |
Chromosome | Chromosome/Scaffold: 061832 Start: 2736 End: 4096 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 2 | 300 | 0 |
SGNNLPPASTVISMYKSNGISAMRLYAPDQGALQAVGGTGISVAVGAPNDVLSSLAASPAAAASWVRNNIQAYPSVSFRYVCVGNEVAGGAAQGLAPAME NVHAALAAAGLGHIKVTTSVSQAILGVYSPPSAAEFTGEAQGYMGPVLQFLARTGSPLMANIYPYLAWAYNPSAMDMSYALFTAPGTVVQDGAYGYQNLF DTTVDAFYFAMGRHGGAGVPLVVSESGWPSGGGQAATPANARVYNQYLINHVGRGTPRHPGGIETYLFSMFNEDQKESGVEQNWGLFYPNMQHVYPISF |
Full Sequence |
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Protein Sequence Length: 301 Download |
MSGNNLPPAS TVISMYKSNG ISAMRLYAPD QGALQAVGGT GISVAVGAPN DVLSSLAASP 60 AAAASWVRNN IQAYPSVSFR YVCVGNEVAG GAAQGLAPAM ENVHAALAAA GLGHIKVTTS 120 VSQAILGVYS PPSAAEFTGE AQGYMGPVLQ FLARTGSPLM ANIYPYLAWA YNPSAMDMSY 180 ALFTAPGTVV QDGAYGYQNL FDTTVDAFYF AMGRHGGAGV PLVVSESGWP SGGGQAATPA 240 NARVYNQYLI NHVGRGTPRH PGGIETYLFS MFNEDQKESG VEQNWGLFYP NMQHVYPISF 300 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 7.0e-9 | 22 | 291 | 289 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 2.0e-125 | 1 | 300 | 305 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PRF/SEQDB | 0 | 1 | 300 | 35 | 334 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
PDB | 1AQ0 | 0 | 1 | 300 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
GenBank | ACG36462.1 | 0 | 1 | 300 | 37 | 336 | lichenase-2 precursor [Zea mays] |
RefSeq | NP_001148461.1 | 0 | 1 | 300 | 37 | 336 | lichenase-2 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 1 | 300 | 7 | 306 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1aq0_B | 0 | 1 | 300 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 1 | 300 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 1 | 300 | 7 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 1 | 300 | 8 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL856034 | 231 | 71 | 301 | 0 |
FL900126 | 236 | 66 | 301 | 0 |
FL902757 | 236 | 66 | 301 | 0 |
FL875178 | 236 | 66 | 301 | 0 |
FL864165 | 236 | 66 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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