Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016958m |
Family | CBM43 |
Protein Properties | Length: 481 Molecular Weight: 51712.2 Isoelectric Point: 6.0034 |
Chromosome | Chromosome/Scaffold: 065066 Start: 1616 End: 3247 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 366 | 446 | 5.4e-23 |
WCVFDDGAKDKAKLPGNIQYACASGDCTALGYGCSCNGLDEKSNISYAFNMYFQMQDQDVRACDFDGLAKITDKNASARGC | |||
GH17 | 30 | 343 | 0 |
VGVNWGSQLSHPLLPDSVVKMLKANGIARVKMFDADPWPVGALVDSGIEVMLGIPNDMLETMNSYGNAEDWVKENVTAYGDKLKLKYVAVGNEPFLKAYN GSFMKTTFPALKNVQKALDEAGVGDKVKAVVPLNADVYVSPDDKPSSGAFRPDIKDLMTDMVKFLHDHGAPFVVNIYPFLSLYQSDDFPFEFAFLTAAGA SRTRAAYSNVFDANYDTLVNALKKAGVPNLKVVVGEAGWPTDGNKNANLKLARRFYDGLLKKLSKGDGTPVRPGKMEVYLFGLFDEDMKSIAPGNFERHW GIFTYDGKSKFPLD |
Full Sequence |
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Protein Sequence Length: 481 Download |
MARLLRLLAG AAALLLAASA AMAGGDTVEV GVNWGSQLSH PLLPDSVVKM LKANGIARVK 60 MFDADPWPVG ALVDSGIEVM LGIPNDMLET MNSYGNAEDW VKENVTAYGD KLKLKYVAVG 120 NEPFLKAYNG SFMKTTFPAL KNVQKALDEA GVGDKVKAVV PLNADVYVSP DDKPSSGAFR 180 PDIKDLMTDM VKFLHDHGAP FVVNIYPFLS LYQSDDFPFE FAFLTAAGAS RTRAAYSNVF 240 DANYDTLVNA LKKAGVPNLK VVVGEAGWPT DGNKNANLKL ARRFYDGLLK KLSKGDGTPV 300 RPGKMEVYLF GLFDEDMKSI APGNFERHWG IFTYDGKSKF PLDLTGQGHD SLLSPVPDVQ 360 YLPHQWCVFD DGAKDKAKLP GNIQYACASG DCTALGYGCS CNGLDEKSNI SYAFNMYFQM 420 QDQDVRACDF DGLAKITDKN ASARGCLFPI QVLSAGGRAS PGIGRAAAAA IVALAVMLFV 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-5 | 261 | 335 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-16 | 365 | 434 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-29 | 365 | 448 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-71 | 30 | 343 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR38156.1 | 0 | 26 | 454 | 34 | 465 | unknown [Zea mays] |
GenBank | EAZ37505.1 | 0 | 25 | 451 | 28 | 456 | hypothetical protein OsJ_21839 [Oryza sativa Japonica Group] |
RefSeq | NP_001057968.1 | 0 | 25 | 451 | 28 | 456 | Os06g0590600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002275701.1 | 0 | 30 | 458 | 27 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002438620.1 | 0 | 20 | 458 | 30 | 472 | hypothetical protein SORBIDRAFT_10g022940 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 30 | 345 | 3 | 315 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 3ur8_A | 0 | 30 | 345 | 3 | 315 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 3ur7_B | 0 | 30 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 30 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 30 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |