Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017007m |
Family | GT5 |
Protein Properties | Length: 669 Molecular Weight: 72941.9 Isoelectric Point: 5.2043 |
Chromosome | Chromosome/Scaffold: 065272 Start: 77 End: 3524 |
Description | starch synthase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 178 | 661 | 0 |
NVIVVSAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAFDMGITKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQGDIYGGNRQ EIMKRMILFCKVAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAHQGRGPVAEYPYMDLPEHYLQHFELYDPV GGEHANIFAAGLKMADQVVTVSRGYLWELKTVEGGWGLHDIIRSNDWKMNGIVNGIDHQEWSPEVDAHLRSDGYTNYSLRTLDAGKRQCKAALQRELGLE VRDDVPLLGFIGRLDGQKGVDIIGDAMPWLAGQDVQLVMLGAGRADLERMLQQLERAHHDRVRGWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFGDAGLGWTFDRAEPGKLVEALGHCLDTYRNYRESWRGIQARGMSQDLSWDHAAELYEEVL |
Full Sequence |
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Protein Sequence Length: 669 Download |
GQPLRLRAAG NAAAGQNGAL AGGETKSIVA APPATIVKFP GPGYTVILPA AQDVAPRAAV 60 PVPAPEPPPL PPSEENFVSP PASIPMPGAD GNAGLAEKRR AQVDVEGVPN PIPPPPPPPP 120 PAPAVQEQEA AWDFKKYIGF DEPVETKDEA GVGADVAGSF EDHENDDPGP LAGENVMNVI 180 VVSAECSPWC KTGGLGDVAG ALPKALARRG HRVMVVVPRY GDYAEAFDMG ITKYYKAAGQ 240 DLEVKYFHAF IDGVDFVFID APLFRHRQGD IYGGNRQEIM KRMILFCKVA VEVPWHVPCG 300 GVCYGDGNLV FIANDWHTAL LPVYLKAYYR DNGMMQYTRS VLVIHNIAHQ GRGPVAEYPY 360 MDLPEHYLQH FELYDPVGGE HANIFAAGLK MADQVVTVSR GYLWELKTVE GGWGLHDIIR 420 SNDWKMNGIV NGIDHQEWSP EVDAHLRSDG YTNYSLRTLD AGKRQCKAAL QRELGLEVRD 480 DVPLLGFIGR LDGQKGVDII GDAMPWLAGQ DVQLVMLGAG RADLERMLQQ LERAHHDRVR 540 GWVGFSVPMA HRITAGADVL LMPSRFEPCG LNQLYAMAYG TVPVVHAVGG LRDTVAPFDP 600 FGDAGLGWTF DRAEPGKLVE ALGHCLDTYR NYRESWRGIQ ARGMSQDLSW DHAAELYEEV 660 LVKAKYQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-81 | 177 | 659 | 506 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 8.0e-130 | 177 | 666 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 1.0e-157 | 177 | 661 | 498 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 177 | 664 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 178 | 661 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD13341.1 | 0 | 8 | 668 | 112 | 732 | starch synthase isoform zSTSII-1 [Zea mays] |
GenBank | AAS77569.1 | 0 | 8 | 668 | 112 | 729 | starch synthase IIa [Zea mays] |
GenBank | ACC86844.1 | 0 | 7 | 668 | 119 | 743 | starch synthase IIa precursor [Sorghum bicolor] |
GenBank | ACR34914.1 | 0 | 8 | 668 | 112 | 732 | unknown [Zea mays] |
RefSeq | XP_002436755.1 | 0 | 7 | 668 | 119 | 763 | hypothetical protein SORBIDRAFT_10g008200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 177 | 662 | 10 | 509 | A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67 A Resolution |
PDB | 3vue_A | 0 | 177 | 662 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 177 | 665 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 1rzv_B | 0 | 177 | 657 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 177 | 657 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 312 | 358 | 669 | 0 |
HO777841 | 195 | 164 | 358 | 0 |
HO781048 | 392 | 278 | 669 | 0 |
HO445868 | 437 | 233 | 669 | 0 |
HO781048 | 43 | 239 | 281 | 0.35 |
Sequence Alignments (This image is cropped. Click for full image.) |
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