Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017278m |
Family | GT47 |
Protein Properties | Length: 381 Molecular Weight: 43419.2 Isoelectric Point: 7.8352 |
Chromosome | Chromosome/Scaffold: 051442 Start: 3786 End: 5565 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 13 | 308 | 0 |
RLKVYVYELPTKYNKKMVAKDSRCLSHMFAAEIFMHRFLLSSAIRTLNPEEADWFYTPVYTTCDLTPWGHPLPFKSPRIMRSAIQFISKRWPYWNRTEGA DHFFVVPHDFGACFHYQEEKAIERGVLPLLRRATLVQTFGQKDHVCLKEGSITIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYARGA RASVWENFKNNPLFDISTDHPPTYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVAEDDVPKLDTILTSI |
Full Sequence |
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Protein Sequence Length: 381 Download |
SAGDVLEDDP VGRLKVYVYE LPTKYNKKMV AKDSRCLSHM FAAEIFMHRF LLSSAIRTLN 60 PEEADWFYTP VYTTCDLTPW GHPLPFKSPR IMRSAIQFIS KRWPYWNRTE GADHFFVVPH 120 DFGACFHYQE EKAIERGVLP LLRRATLVQT FGQKDHVCLK EGSITIPPYA PPQKMKTHLV 180 PPETPRSIFV YFRGLFYDTA NDPEGGYYAR GARASVWENF KNNPLFDIST DHPPTYYEDM 240 QRAVFCLCPL GWAPWSPRLV EAVVFGCIPV IIADDIVLPF ADAIPWEEIG VFVAEDDVPK 300 LDTILTSIPM EVILRKQRLL ANPSMKQAML FPQPAQPGDA FHQILNGLAR KLPHGKDVFL 360 KPGQKVLNWT KGPRGDLKPW * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam03016 | Exostosin | 7.0e-84 | 13 | 308 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG31432.1 | 0 | 1 | 380 | 40 | 419 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | NP_001045263.1 | 0 | 1 | 380 | 36 | 415 | Os01g0926600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001142343.1 | 0 | 1 | 380 | 40 | 419 | hypothetical protein LOC100274514 [Zea mays] |
RefSeq | XP_002440185.1 | 0 | 1 | 380 | 37 | 416 | hypothetical protein SORBIDRAFT_09g027450 [Sorghum bicolor] |
RefSeq | XP_002459016.1 | 0 | 1 | 380 | 38 | 417 | hypothetical protein SORBIDRAFT_03g044520 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO868810 | 331 | 26 | 356 | 0 |
GO846508 | 325 | 57 | 381 | 0 |
GO872051 | 325 | 24 | 348 | 0 |
GT033383 | 310 | 72 | 381 | 0 |
GO868810 | 22 | 356 | 377 | 0.22 |
Sequence Alignments (This image is cropped. Click for full image.) |
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