Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017327m |
Family | GH28 |
Protein Properties | Length: 526 Molecular Weight: 57139.2 Isoelectric Point: 9.5609 |
Chromosome | Chromosome/Scaffold: 049024 Start: 1424 End: 5116 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 487 | 0 |
AAIAERGGGRLTVPAGRWLTAPFNLTSRMTLFLAAGAEILGIQDERYWPLMSPLPSYGYGREHKGPRYGSLIHGQDLKDVTITGHNGTINGQGQSWWVKF RRKLLNHTRGPLVQLMRSSNIIISNITLRDSPFWTLHTYDCKNVTISETTILAPIAGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGISYG RPSANIIIQNVIIRSMVSAGVSIGSEMSGGVSNVLVENVHVWDSRRGVRIKTAPGRGAYVSNIAYRNISLENVRVGIVIKTDYNEHPDEGFNPKALPIIE NISYTSIHGHGVRVPVRIQGCAEIPVKNVTFHDMSVGIADRKHHVFQCSFVQGQ |
Full Sequence |
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Protein Sequence Length: 526 Download |
SHAPSPPDPM LETAAASSPR AAAAAAAAAA AAAASAVSSP RRGGGAAHHH RRWAPAPFRA 60 CLVALWLVGF ALVFLWQSTS VGRVRLYTRP PMPKRAAPSM GQWVASPPVY DLREFGAFGD 120 GRTVNTAAFE AAVAAIAERG GGRLTVPAGR WLTAPFNLTS RMTLFLAAGA EILGIQDERY 180 WPLMSPLPSY GYGREHKGPR YGSLIHGQDL KDVTITGHNG TINGQGQSWW VKFRRKLLNH 240 TRGPLVQLMR SSNIIISNIT LRDSPFWTLH TYDCKNVTIS ETTILAPIAG APNTDGIDPD 300 SCENVVIKNC YISVGDDGIA IKSGWDQYGI SYGRPSANII IQNVIIRSMV SAGVSIGSEM 360 SGGVSNVLVE NVHVWDSRRG VRIKTAPGRG AYVSNIAYRN ISLENVRVGI VIKTDYNEHP 420 DEGFNPKALP IIENISYTSI HGHGVRVPVR IQGCAEIPVK NVTFHDMSVG IADRKHHVFQ 480 CSFVQGQVIG YIFPMPCKNL DMYNERRELV KQSTFQNISD IDYSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-25 | 106 | 442 | 358 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-29 | 111 | 470 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-29 | 92 | 497 | 422 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-41 | 205 | 469 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-62 | 109 | 427 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC84640.1 | 0 | 43 | 525 | 36 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
GenBank | EEE69791.1 | 0 | 100 | 525 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
RefSeq | NP_001063274.1 | 0 | 43 | 525 | 36 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002277239.1 | 0 | 48 | 525 | 13 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002460269.1 | 0 | 38 | 525 | 27 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 92 | 466 | 6 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 92 | 466 | 6 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 92 | 466 | 6 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 92 | 466 | 6 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-19 | 151 | 464 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |