| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00017728m |
| Family | CE8 |
| Protein Properties | Length: 259 Molecular Weight: 27768.4 Isoelectric Point: 5.2685 |
| Chromosome | Chromosome/Scaffold: 048857 Start: 1141 End: 2301 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 164 | 241 | 9.2e-23 |
| GRAWQAYSRVVFAYTYMPAIVASAGWDNWGQESRNSTVFYGEHGCRGDGANMAGRVAYARNLDDSQARPFLDASYIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 259 Download |
| MLRLGVAAAV VLIFCHFSPS GSTACLPSFP LPERSSTAVF CVDANGCCNF TTVQAAVDAT 60 PPDSEKRNVV WINSGIYIEK VTVKKPNVTF QGQGLKATTI NAAPAPKPGA VGAQAVAIRI 120 SGDMAAFWGC GFFGAQDTLL DDQLRHYFKE CFIEGSIDFI FGDGRAWQAY SRVVFAYTYM 180 PAIVASAGWD NWGQESRNST VFYGEHGCRG DGANMAGRVA YARNLDDSQA RPFLDASYID 240 GHEWLKPLDD ALIAPVSA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 7.0e-34 | 164 | 250 | 87 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-55 | 33 | 246 | 288 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 3.0e-59 | 27 | 166 | 175 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 6.0e-61 | 42 | 247 | 291 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 3.0e-67 | 49 | 247 | 289 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB71446.1 | 0 | 28 | 246 | 79 | 387 | Similar to Prunus pectinesterase (gb |
| GenBank | ABN08648.1 | 0 | 27 | 246 | 77 | 388 | Pectinesterase [Medicago truncatula] |
| RefSeq | NP_172023.1 | 0 | 28 | 246 | 79 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002445213.1 | 0 | 36 | 254 | 88 | 398 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
| RefSeq | XP_002454459.1 | 0 | 22 | 253 | 36 | 349 | hypothetical protein SORBIDRAFT_04g031450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 7e-20 | 41 | 163 | 10 | 162 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1gq8_A | 0.0000003 | 164 | 246 | 224 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.000000000002 | 41 | 163 | 6 | 158 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1xg2_A | 0.000000005 | 164 | 246 | 220 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.0000007 | 38 | 166 | 6 | 183 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
