Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017739m |
Family | GH47 |
Protein Properties | Length: 350 Molecular Weight: 38529.3 Isoelectric Point: 4.5615 |
Chromosome | Chromosome/Scaffold: 047888 Start: 245 End: 4200 |
Description | Glycosyl hydrolase family 47 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH47 | 7 | 152 | 8.89965e-42 |
VLAGDVDPAIRTHDAFFSVWKKYGFTPEGFNLATSTVQNGQRSYPLRPELIESTYWLFKATRDYRYIDVGRDILVSLQYGARCPCGYCHISDVETHKQDD HMESFFLAETVKYLWLLFDLAVGPDNIVENGPYKYIFSTEGHLLPV |
Full Sequence |
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Protein Sequence Length: 350 Download |
MLLRFKVLAG DVDPAIRTHD AFFSVWKKYG FTPEGFNLAT STVQNGQRSY PLRPELIEST 60 YWLFKATRDY RYIDVGRDIL VSLQYGARCP CGYCHISDVE THKQDDHMES FFLAETVKYL 120 WLLFDLAVGP DNIVENGPYK YIFSTEGHLL PVTPEIALAD EHCSYLGAFC NGSADRGYGT 180 SASSTKHKKA NYTQLDDIQT PSSHYSASNM FATRGYIKGV CPGLTHAQKL GISYSDEEGN 240 VIEQTSESHE HHGESAVESS IQAQSSNIIL ISHPVASQQD EALGRWSGTG DHADIVVTSD 300 SDSITLSHDN TDGSLGVNTE ELTEDTESSS KQSEDEAIAQ NLKSNEDIS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PTZ00470 | PTZ00470 | 5.0e-23 | 30 | 154 | 132 | + glycoside hydrolase family 47 protein; Provisional | ||
pfam01532 | Glyco_hydro_47 | 1.0e-42 | 5 | 152 | 162 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). |
Gene Ontology | |
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GO Term | Description |
GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
GO:0005509 | calcium ion binding |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD52943.1 | 0 | 5 | 339 | 334 | 663 | putative aspartyl(D) tRNA Synthetase (89.0 kD)(drs-2C) [Oryza sativa Japonica Group] |
GenBank | EEC71566.1 | 0 | 5 | 339 | 311 | 627 | hypothetical protein OsI_03924 [Oryza sativa Indica Group] |
GenBank | EEE55466.1 | 0 | 5 | 339 | 311 | 640 | hypothetical protein OsJ_03634 [Oryza sativa Japonica Group] |
RefSeq | NP_001044401.1 | 0 | 5 | 339 | 342 | 671 | Os01g0773600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132501.1 | 0 | 5 | 325 | 330 | 650 | hypothetical protein LOC100193961 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x9d_A | 0.00000000000002 | 30 | 152 | 405 | 534 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
PDB | 1fo3_A | 0.00000000000003 | 30 | 154 | 327 | 459 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
PDB | 1fo2_A | 0.00000000000003 | 30 | 154 | 327 | 459 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin |
PDB | 1fmi_A | 0.00000000000004 | 30 | 152 | 327 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase |
PDB | 1nxc_A | 0.000000000003 | 19 | 155 | 334 | 468 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL990757 | 254 | 56 | 309 | 0 |
JG889781 | 251 | 3 | 253 | 0 |
GD015156 | 238 | 56 | 293 | 0 |
FL764779 | 241 | 39 | 279 | 0 |
GD011615 | 229 | 56 | 284 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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