Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017870m |
Family | CBM43 |
Protein Properties | Length: 122 Molecular Weight: 13115 Isoelectric Point: 8.0889 |
Chromosome | Chromosome/Scaffold: 049248 Start: 472 End: 1766 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 38 | 118 | 3.2e-29 |
WCIAKPSASNEILAQNLDYACSQVSCAVIQKGGPCYYPDSLVSRAAVAMNLYYAYSGRHAWNCYFNNSALVVQSDPSYGSC |
Full Sequence |
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Protein Sequence Length: 122 Download |
MGRGAQPSAP LLLFSLGLVL LYFTAGSTVR LAEAQKTWCI AKPSASNEIL AQNLDYACSQ 60 VSCAVIQKGG PCYYPDSLVS RAAVAMNLYY AYSGRHAWNC YFNNSALVVQ SDPSYGSCTY 120 Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-14 | 37 | 106 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-29 | 37 | 120 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG26564.1 | 0 | 35 | 121 | 73 | 159 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
GenBank | ACG36169.1 | 0 | 16 | 121 | 5 | 109 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
GenBank | ACG39487.1 | 0 | 22 | 121 | 23 | 122 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
RefSeq | XP_002446660.1 | 0 | 4 | 121 | 5 | 122 | hypothetical protein SORBIDRAFT_06g020000 [Sorghum bicolor] |
RefSeq | XP_002454863.1 | 0 | 1 | 121 | 2 | 123 | hypothetical protein SORBIDRAFT_03g000270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-25 | 33 | 120 | 8 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |