Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00017919m |
Family | GH28 |
Protein Properties | Length: 492 Molecular Weight: 52191.1 Isoelectric Point: 6.3426 |
Chromosome | Chromosome/Scaffold: 048738 Start: 3014 End: 5264 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 439 | 0 |
GGGGAMLYVPAGKWLTGPFNLTSHFTLFLHSDAVILGSTDISEWPVIDPLPSYGRGRDKVGGRYASLIGGSNLTDVVVTGENGTIDGQGAVWWSKFRSNK LKYTRGYLIEVLWSDTVVVSNVTLLNSPAWNIHPVYSSNIVVQGVTILAPTRSPNTDGINPDSCSHVRIEDCYVVSGDDCVAIKSGWDEYGIRVGMPSQH IVVRRLTCVSPTSAVIALGSEMSGGIRDVRAEDIAAVDSESGVRIKTAVGRGAFVRDVFVRRMTLQTMKWVFWMTGNYKSHPDDGFDPGAVPVVEGISYQ DVVATGVYKAAARLEGIQGAPFRGICLANVTAELDKSKKYPWTCADVEG |
Full Sequence |
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Protein Sequence Length: 492 Download |
MASPMLNASP LLQLARSVWC VLLLAASSTV SGRHHSAPAA SRTGQSMYIS PNCRAHTASL 60 ADFGAVGDGT TSNTAAFRSA VDHLSQYSGE GGGGAMLYVP AGKWLTGPFN LTSHFTLFLH 120 SDAVILGSTD ISEWPVIDPL PSYGRGRDKV GGRYASLIGG SNLTDVVVTG ENGTIDGQGA 180 VWWSKFRSNK LKYTRGYLIE VLWSDTVVVS NVTLLNSPAW NIHPVYSSNI VVQGVTILAP 240 TRSPNTDGIN PDSCSHVRIE DCYVVSGDDC VAIKSGWDEY GIRVGMPSQH IVVRRLTCVS 300 PTSAVIALGS EMSGGIRDVR AEDIAAVDSE SGVRIKTAVG RGAFVRDVFV RRMTLQTMKW 360 VFWMTGNYKS HPDDGFDPGA VPVVEGISYQ DVVATGVYKA AARLEGIQGA PFRGICLANV 420 TAELDKSKKY PWTCADVEGV SANVSPPPCE ALQQGGVDGA CPFPTDTLPI DQLVLQQCAY 480 DVPAPASPGK Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-20 | 11 | 449 | 462 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-21 | 62 | 449 | 414 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-24 | 57 | 449 | 407 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 158 | 449 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 58 | 355 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG41831.1 | 0 | 47 | 484 | 1 | 437 | glycoside hydrolase, family 28 [Zea mays] |
DDBJ | BAD67712.1 | 0 | 4 | 484 | 7 | 483 | putative polygalacturonase [Oryza sativa Japonica Group] |
RefSeq | NP_001151164.1 | 0 | 6 | 484 | 8 | 484 | glycoside hydrolase, family 28 [Zea mays] |
RefSeq | XP_002278930.1 | 0 | 48 | 480 | 43 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002437680.1 | 0 | 6 | 483 | 8 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.4013e-45 | 50 | 423 | 20 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.4013e-45 | 50 | 423 | 20 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.4013e-45 | 50 | 423 | 20 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.4013e-45 | 50 | 423 | 20 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000007 | 74 | 337 | 26 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |