| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00018035m |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 51636.4 Isoelectric Point: 6.3858 |
| Chromosome | Chromosome/Scaffold: 053646 Start: 1415 End: 4545 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 73 | 410 | 0 |
| ADKGGAQLFVPAGKWLTGSFGLISHLTLSLDKDAVIIGSPDSSDWPVVDPLPSYGRGRELPGKRHQSLIFGSYLTDVIITGANGTIDGQGAIWWDWFHNN TLNYTRPHLVELMYSTNVVISNLTFTNSPFWNIHPVYCSQVLVQHVTILAPLYSPNTDGIDPDSSTNVCINNCYVRNGDDVIVIKSGWDEYGISFAKPSS NISISNITGETRGGAGIAFGSEMSGGISEVRAEGLHIINSLHGIRIKTAPGRGGYVKNVFIADVSMDNVSIAIRISGNFGEHPDDKYDRNALPMISNITI KDVVGINIGVAGILEGIHGDKFSNICLSNVSLSVHSAH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MRRSASLFQV LLVLTTMVKT QWSTVSGIYC KEMSPNVYRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAQL FVPAGKWLTG SFGLISHLTL SLDKDAVIIG SPDSSDWPVV 120 DPLPSYGRGR ELPGKRHQSL IFGSYLTDVI ITGANGTIDG QGAIWWDWFH NNTLNYTRPH 180 LVELMYSTNV VISNLTFTNS PFWNIHPVYC SQVLVQHVTI LAPLYSPNTD GIDPDSSTNV 240 CINNCYVRNG DDVIVIKSGW DEYGISFAKP SSNISISNIT GETRGGAGIA FGSEMSGGIS 300 EVRAEGLHII NSLHGIRIKT APGRGGYVKN VFIADVSMDN VSIAIRISGN FGEHPDDKYD 360 RNALPMISNI TIKDVVGINI GVAGILEGIH GDKFSNICLS NVSLSVHSAH PWNCSLIEGY 420 SNSVIPESCE QLRSNCRQTS DCYDGSSSSA IHGQEPRDTL STSRLLNPLM KFALF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-23 | 40 | 377 | 350 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-26 | 10 | 347 | 352 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-29 | 41 | 385 | 359 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-33 | 147 | 429 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-55 | 3 | 397 | 425 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF99735.1 | 0 | 17 | 475 | 1 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN28107.1 | 0 | 1 | 467 | 1 | 467 | unknown [Zea mays] |
| RefSeq | NP_001051812.1 | 0 | 1 | 475 | 1 | 476 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151479.1 | 0 | 1 | 467 | 1 | 467 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 17 | 475 | 1 | 459 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-40 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-40 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-40 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-40 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-20 | 87 | 408 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
