| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00018090m |
| Family | GH51 |
| Protein Properties | Length: 573 Molecular Weight: 63826.1 Isoelectric Point: 5.498 |
| Chromosome | Chromosome/Scaffold: 053150 Start: 619 End: 4936 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 103 | 452 | 0 |
| ASASTRHINLSNWTKVELQLLAQGTCRTARLELTTSKRGVLWLDQVSLMPSDTYKGHGFRKDLTYMLLDLKPRFLRFPGGCFVEGNWLSNAFRWKETTGP WEERPGHYGDVWNYWTDDGLGYYEFLQLAEDLDALPIWVFNAGISHNDAVNSSMILPFVKDAMDSLEFARGNAESTWGSVRVAMGHPDPFPLKYVAIGNE NCGYGSYRGNYMAFYSAIRKAYPDIQIISNCDGSSKALDTPADFYEYHNYTDTAAKLFIAKNQFDKTSRSGPKVFISEYAVRDGHNGSLLASLAEAAFLT GVEKNSDYIQMASYAPMFVNEKDRTWSPDAIVFNSWQQYGTPSYWMQTFF | |||
| Full Sequence |
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| Protein Sequence Length: 573 Download |
| FEAVINNTPT IEPWSIIGDE SSLHLTADRA SCFTKNIVAL RMEVLCDNCP PGGVGIYNPG 60 FWGMNIEEGK TYNLVMYARS PDSMELIVSL TCSRPSGALK NLASASTRHI NLSNWTKVEL 120 QLLAQGTCRT ARLELTTSKR GVLWLDQVSL MPSDTYKGHG FRKDLTYMLL DLKPRFLRFP 180 GGCFVEGNWL SNAFRWKETT GPWEERPGHY GDVWNYWTDD GLGYYEFLQL AEDLDALPIW 240 VFNAGISHND AVNSSMILPF VKDAMDSLEF ARGNAESTWG SVRVAMGHPD PFPLKYVAIG 300 NENCGYGSYR GNYMAFYSAI RKAYPDIQII SNCDGSSKAL DTPADFYEYH NYTDTAAKLF 360 IAKNQFDKTS RSGPKVFISE YAVRDGHNGS LLASLAEAAF LTGVEKNSDY IQMASYAPMF 420 VNEKDRTWSP DAIVFNSWQQ YGTPSYWMQT FFRESSGALI HPVTITSRYS DLLAASAITW 480 QDNEKSFLRV KIVNFGSGAV NLTIRATGLQ VGVNTKRSRV TILTSGNVLD ENSFSNPEKI 540 LPVMKGLPNA AEAMHSFLSP YSFTSFDLAL DE* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06964 | Alpha-L-AF_C | 4.0e-28 | 402 | 562 | 170 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 2.0e-28 | 160 | 322 | 174 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 1.0e-39 | 402 | 562 | 168 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC67598.1 | 0 | 1 | 572 | 81 | 651 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| GenBank | EEC67602.1 | 0 | 1 | 572 | 49 | 620 | hypothetical protein OsI_34972 [Oryza sativa Indica Group] |
| RefSeq | NP_001065660.1 | 0 | 1 | 572 | 81 | 651 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001065664.1 | 0 | 1 | 572 | 78 | 649 | Os11g0132600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066063.1 | 0 | 7 | 570 | 7 | 570 | Os12g0128800 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 3e-19 | 160 | 571 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 3e-19 | 160 | 571 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 3e-19 | 160 | 571 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 3e-19 | 160 | 571 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 3e-19 | 160 | 571 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO801860 | 332 | 11 | 342 | 0 |
| GT046204 | 349 | 145 | 491 | 0 |
| HO852683 | 417 | 160 | 570 | 0 |
| GT048615 | 349 | 205 | 550 | 0 |
| JG577027 | 332 | 18 | 349 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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