Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00018091m |
Family | CBM22 |
Protein Properties | Length: 752 Molecular Weight: 81993.4 Isoelectric Point: 5.4942 |
Chromosome | Chromosome/Scaffold: 053256 Start: 1674 End: 4066 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 24 | 162 | 2.7e-30 |
NIILNPEFDDGLDNWAGNGCKIELHDALDDGKVLPANGKYFVAATGRTDTWNGVQQDVTARMQRKLLYEATATVRLHAAAGGVAPCEVRATLGVQTADGR QQYLGVGRSQVSDKEWVQLQGKILLNSTVAKASIYIEGP | |||
CBM22 | 197 | 343 | 3e-40 |
NIIQNSNLDDGLNGWFPLGPCTLSVHDGAPRVLPPMARESLALDDDEPLNGKHIHVTNRTQTWMGPAQIVTDKLTLYATYQVSAWVRVGAQASGGAPQTI NVAVAVDSQWLNGGQVLARDERWYEVGGAFRVEAKPATRVMVYVQGP | |||
GH10 | 408 | 690 | 0 |
VSNSFPLGSCIMRTNMDNEDFVDFFTKNFNWAVFGNELKWYWTEPQRGQVNYGDADDLLRLCSDHGMGVRGHCIFWEVDNAVQQWVKTLSADDLSAAVKS RLTGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAAMFRTAGELDPDALLFVNDYNVESMCDTRATPEAYIQQIVGLQEQGAPVGGVGLQGHVSNPV GPVIRSALDRLAVLGLPIWFTEVDVSSANEHVRADDLEAVLREAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGRVNEAGRR |
Full Sequence |
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Protein Sequence Length: 752 Download |
MAIGGDVAAG LGVVGDGAGA GDDNIILNPE FDDGLDNWAG NGCKIELHDA LDDGKVLPAN 60 GKYFVAATGR TDTWNGVQQD VTARMQRKLL YEATATVRLH AAAGGVAPCE VRATLGVQTA 120 DGRQQYLGVG RSQVSDKEWV QLQGKILLNS TVAKASIYIE GPPAGVDVLL DSLVVKHAQK 180 APPAPAPDFE KLEYGANIIQ NSNLDDGLNG WFPLGPCTLS VHDGAPRVLP PMARESLALD 240 DDEPLNGKHI HVTNRTQTWM GPAQIVTDKL TLYATYQVSA WVRVGAQASG GAPQTINVAV 300 AVDSQWLNGG QVLARDERWY EVGGAFRVEA KPATRVMVYV QGPDAGVDLM VAGLQVFPVD 360 RKARVKHLRR LTDKVRRRDV VVKVTGSDGG AVKQDPAGGG VEVRVRQVSN SFPLGSCIMR 420 TNMDNEDFVD FFTKNFNWAV FGNELKWYWT EPQRGQVNYG DADDLLRLCS DHGMGVRGHC 480 IFWEVDNAVQ QWVKTLSADD LSAAVKSRLT GLLTRYKGKF RHYDVNNEML HGSFYQDKLG 540 KDIRAAMFRT AGELDPDALL FVNDYNVESM CDTRATPEAY IQQIVGLQEQ GAPVGGVGLQ 600 GHVSNPVGPV IRSALDRLAV LGLPIWFTEV DVSSANEHVR ADDLEAVLRE AYAHPAVEGV 660 MLWGFWELFM SRDDAHLVDA EGRVNEAGRR LLQLKREWLT HAHGHADDNG EFRFRGHHGE 720 YHVDVTTPTG KASQTFTVDK DDAPLVLNIK V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 8.0e-13 | 196 | 345 | 157 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 5.0e-19 | 24 | 164 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 7.0e-33 | 396 | 665 | 293 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-79 | 409 | 695 | 307 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 9.0e-82 | 445 | 691 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY91350.1 | 0 | 1 | 751 | 1 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
RefSeq | NP_001050876.1 | 0 | 1 | 751 | 1 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002283550.1 | 0 | 18 | 749 | 261 | 979 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 3e-33 | 22 | 419 | 92 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002466685.1 | 0 | 2 | 751 | 3 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 9e-35 | 396 | 665 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 9e-35 | 396 | 665 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 3e-29 | 435 | 664 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 3e-29 | 435 | 664 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1nq6_A | 3e-29 | 443 | 672 | 44 | 277 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EL428755 | 280 | 412 | 691 | 0 |
EX570690 | 295 | 458 | 752 | 0 |
EX570691 | 281 | 458 | 738 | 0 |
HO789518 | 279 | 451 | 729 | 0 |
GR184067 | 268 | 414 | 681 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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