| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00018295m |
| Family | GH51 |
| Protein Properties | Length: 665 Molecular Weight: 72681.2 Isoelectric Point: 6.6948 |
| Chromosome | Chromosome/Scaffold: 048008 Start: 125 End: 5021 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 210 | 536 | 0 |
| NNTNSRLQFTTSKSGVIWLDQVSVMPLDTYMGHGFRKDLSLMLANLKPQFLKFPGGNYAMGNHLRNAFRWSETVGPWEERPGHFNDAWGYWTDDGLGFFE FLQLAEDLGASPVWVVNDGASLNEEVSTATIASLVKDVVDGIEFARGGPKTPWGSVRAAMGHPEPFKLDYVSIGNQECWMLYYRGNYQKFYSAIKAAYPE VNIISSCDRSTISPSNPADLYDVHVYTSSSNMFSRTSMFDNTPRSAPKAIVSEYAVTGNDAGKGTLVAALAEAAFLIGLERNSDVVEMASCAPLFVNDND RRWSPDAIVFNSWQHYGCPNYWMLHFF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 665 Download |
| TDSPCCVLLL HALAVVCALC WALSARFVQG QSQTGQLTVD ASLQNARKIP DKMFGIFFEE 60 INHAGAGGLW AELVSNRGFE AGGPNTPSNI DPWLIIGDES SIIVGTDRTS CFARNPIALR 120 MEVLCDSKRT NACPSGGVGV YNPGYWGMNI EKGKVYKVSM HIRSSDAVSL TVSLTSSDGR 180 QKLAAHTITG SKKSFAKWTK IEFSLKSRQN NTNSRLQFTT SKSGVIWLDQ VSVMPLDTYM 240 GHGFRKDLSL MLANLKPQFL KFPGGNYAMG NHLRNAFRWS ETVGPWEERP GHFNDAWGYW 300 TDDGLGFFEF LQLAEDLGAS PVWVVNDGAS LNEEVSTATI ASLVKDVVDG IEFARGGPKT 360 PWGSVRAAMG HPEPFKLDYV SIGNQECWML YYRGNYQKFY SAIKAAYPEV NIISSCDRST 420 ISPSNPADLY DVHVYTSSSN MFSRTSMFDN TPRSAPKAIV SEYAVTGNDA GKGTLVAALA 480 EAAFLIGLER NSDVVEMASC APLFVNDNDR RWSPDAIVFN SWQHYGCPNY WMLHFFKDSS 540 GAALHPTTIQ ISDYDQLVAS AITLQNATDR SPYLRIKVVN FGNRAVDLNI SVVGLANGIK 600 MSGSKQTVLT SSNPLDENSF EQPEKVAPVS SPLANAKPQM GLSLRPYSLT SFDLLLEASK 660 HASI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 6.0e-5 | 71 | 220 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3534 | AbfA | 4.0e-6 | 474 | 648 | 193 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 1.0e-26 | 243 | 385 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 2.0e-39 | 461 | 648 | 205 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-49 | 461 | 648 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 9 | 659 | 12 | 660 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACR35485.1 | 0 | 7 | 664 | 9 | 663 | unknown [Zea mays] |
| DDBJ | BAC10349.1 | 0 | 10 | 664 | 12 | 664 | putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I [Oryza sativa Japonica Group] |
| GenBank | EEE58961.1 | 0 | 9 | 659 | 12 | 664 | hypothetical protein OsJ_10647 [Oryza sativa Japonica Group] |
| RefSeq | XP_002463418.1 | 0 | 9 | 664 | 11 | 666 | hypothetical protein SORBIDRAFT_02g043530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 3e-18 | 243 | 657 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 3e-18 | 243 | 657 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 3e-18 | 243 | 657 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 3e-18 | 243 | 657 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 3e-18 | 243 | 657 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
