Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00018555m |
Family | GH28 |
Protein Properties | Length: 296 Molecular Weight: 30722.2 Isoelectric Point: 7.8424 |
Chromosome | Chromosome/Scaffold: 053606 Start: 4575 End: 5477 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 71 | 296 | 0 |
TSACGGTGKQKIMIPKGDFLVGPLNFTGPCKGDVTIQLDGNLLATTDLSQYKANWIEILRVDNLVITGKGKLDGQGPAVWGKNSCAKKYDCKILPNSLVL DFVNNGEVSGITLLNSKFFHMNVFQCKDMVIKDVTVTAPGDSPNTDGIHMGDSSGVTISNTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRY KDEKDVTDITVKDCTLKKSTNGLRIK |
Full Sequence |
---|
Protein Sequence Length: 296 Download |
MAFPNNSMLR ALFLLVLVSV AHAGGKAKES SSAPAEGGGG SCDGGTCDIT KMGATAGGKT 60 DCTKAVQEAW TSACGGTGKQ KIMIPKGDFL VGPLNFTGPC KGDVTIQLDG NLLATTDLSQ 120 YKANWIEILR VDNLVITGKG KLDGQGPAVW GKNSCAKKYD CKILPNSLVL DFVNNGEVSG 180 ITLLNSKFFH MNVFQCKDMV IKDVTVTAPG DSPNTDGIHM GDSSGVTISN TVIGVGDDCI 240 SIGPGTTKVN ITGVTCGPGH GISIGSLGRY KDEKDVTDIT VKDCTLKKST NGLRIK 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-53 | 49 | 296 | 255 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-54 | 49 | 296 | 252 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 9.0e-56 | 49 | 296 | 255 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-89 | 53 | 296 | 246 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-89 | 74 | 296 | 223 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA44248.1 | 0 | 1 | 296 | 1 | 292 | polygalacturonase [Zea mays] |
RefSeq | NP_001105432.1 | 0 | 1 | 296 | 1 | 292 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001105862.1 | 0 | 1 | 296 | 1 | 292 | exopolygalacturonase precursor [Zea mays] |
Swiss-Prot | P35339 | 0 | 1 | 296 | 1 | 292 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
RefSeq | XP_002437275.1 | 0 | 1 | 296 | 1 | 292 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.00000000000003 | 142 | 296 | 80 | 232 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 142 | 296 | 80 | 232 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 142 | 296 | 80 | 232 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000003 | 142 | 296 | 80 | 232 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.00000000000003 | 142 | 296 | 80 | 232 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |