y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00018921m |
Family | GH3 |
Protein Properties | Length: 571 Molecular Weight: 60533.4 Isoelectric Point: 5.5675 |
Chromosome | Chromosome/Scaffold: 050062 Start: 2156 End: 5640 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 37 | 132 | 4.3e-29 |
QVSQQDLDDTFQPPFKSCVVDGNVASVMCSYNQVNGTPTCADKDLLSGVIRGDWKLNGYISSDCDSVDVLYNNQHYTKTPEDAAAISIKAGLDLNC |
Full Sequence |
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Protein Sequence Length: 571 Download |
MGLDWNLTCG GAVPDWPIFS CTDDGIAPCR IACRRWQVSQ QDLDDTFQPP FKSCVVDGNV 60 ASVMCSYNQV NGTPTCADKD LLSGVIRGDW KLNGYISSDC DSVDVLYNNQ HYTKTPEDAA 120 AISIKAGLDL NCGNFLAQHT VAAVQAGKLS ESDVDRAITN NFITLMRLGF FDGDPRELPF 180 GSLGPSDVCT SSNQELAREA ARQGIVLLKN NGALPLSTKS IKSMAVIGPN ANASFTMIGN 240 YEGTPCKYTT PLQGLGANVA TVYQPGCTNV GCSGNSLQLD AATKAAASAD VTVLIVGADQ 300 SIERESLDRT SLLLPGQQPQ LVSAVANASS GPCILVIMSG GPFDISFAKS SDKIAAILWV 360 GYPGEAGGAA IADVLFGYHN PSGRLPVSWY PESFTKIPMT DMRMRPDPST GYPGRTYRFY 420 TGDTVYAFGD GLSYTNYAHR LVSAPTQVAV QLAEGHACLT EQCLSVEAEG GHCENLAFDV 480 HLRVRNAGKV GGAHTVFLFS SPPAVHNAPA KHLLGFEKVS LEPGQAGVVA FKVDVCRDLS 540 VVDELGNRKV ALGSHTLHVG DLKHTLNLRV * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00933 | Glyco_hydro_3 | 1.0e-27 | 37 | 160 | 127 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-31 | 38 | 268 | 234 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-55 | 205 | 435 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 1.0e-63 | 39 | 535 | 536 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 38 | 570 | 545 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE03635.1 | 0 | 38 | 570 | 306 | 839 | OSJNBb0003B01.27 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEE61783.1 | 0 | 38 | 570 | 240 | 771 | hypothetical protein OsJ_16354 [Oryza sativa Japonica Group] |
RefSeq | NP_001054038.1 | 0 | 38 | 570 | 232 | 765 | Os04g0640700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146416.1 | 0 | 64 | 570 | 1 | 507 | hypothetical protein LOC100279996 [Zea mays] |
RefSeq | XP_002448619.1 | 0 | 38 | 570 | 235 | 767 | hypothetical protein SORBIDRAFT_06g030270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 6e-39 | 38 | 533 | 200 | 696 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u48_A | 6e-39 | 38 | 533 | 200 | 696 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_B | 3e-38 | 38 | 533 | 200 | 696 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_A | 3e-38 | 38 | 533 | 200 | 696 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3zz1_A | 2e-31 | 41 | 570 | 179 | 712 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE024453 | 287 | 45 | 331 | 0 |
EE181759 | 270 | 95 | 364 | 0 |
FE627783 | 246 | 203 | 448 | 0 |
EB671668 | 257 | 177 | 433 | 0 |
EB814908 | 247 | 305 | 551 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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