Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00019408m |
Family | AA3 |
Protein Properties | Length: 342 Molecular Weight: 37191.3 Isoelectric Point: 7.2526 |
Chromosome | Chromosome/Scaffold: 0279859 Start: 100 End: 1454 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 33 | 340 | 0 |
NEVILSAGTLGSPQLLMLSGVGPQAHLEAHGIQVLVDQPMVGQGVADNPMNSVFIPSPVPVALSLVQVVGITRSGSFIEGVSGSEFGIPVSDGARLLARS FGLFSPQTGQLGTLPPKQRTPEALQRAAEAMRRLDRRAFRGGFILEKILGPVSSGHIELRSTDPRANPAVTFNYFQEKEDLDRCVHGIETIERIIQSQAF ANFTYANASVESIFTDSANFPVNLLPRHANDSRTPEQYCRDTVMTIWHYHGGCQVGAVVDDDYRVFGVQRLRVIDSSTFKYSPGTNPQATVMMLGRYMGV KIQAERWR |
Full Sequence |
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Protein Sequence Length: 342 Download |
MTEGAAYPVA YGVVFADPLG AQHRVYLQDG GKNEVILSAG TLGSPQLLML SGVGPQAHLE 60 AHGIQVLVDQ PMVGQGVADN PMNSVFIPSP VPVALSLVQV VGITRSGSFI EGVSGSEFGI 120 PVSDGARLLA RSFGLFSPQT GQLGTLPPKQ RTPEALQRAA EAMRRLDRRA FRGGFILEKI 180 LGPVSSGHIE LRSTDPRANP AVTFNYFQEK EDLDRCVHGI ETIERIIQSQ AFANFTYANA 240 SVESIFTDSA NFPVNLLPRH ANDSRTPEQY CRDTVMTIWH YHGGCQVGAV VDDDYRVFGV 300 QRLRVIDSST FKYSPGTNPQ ATVMMLGRYM GVKIQAERWR K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 5.0e-15 | 10 | 79 | 70 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 8.0e-17 | 183 | 327 | 152 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 5.0e-28 | 183 | 327 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 2.0e-31 | 34 | 328 | 304 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 9.0e-142 | 4 | 338 | 336 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF65820.1 | 0 | 3 | 341 | 251 | 589 | AF251031_1 putative mandelonitrile lyase [Oryza sativa] |
GenBank | ACN28873.1 | 0 | 3 | 341 | 158 | 496 | unknown [Zea mays] |
GenBank | EAY79265.1 | 0 | 3 | 341 | 250 | 588 | hypothetical protein OsI_34381 [Oryza sativa Indica Group] |
RefSeq | NP_001065107.1 | 0 | 3 | 341 | 248 | 586 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002467623.1 | 0 | 3 | 341 | 244 | 582 | hypothetical protein SORBIDRAFT_01g031110 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 9 | 338 | 230 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 9 | 338 | 230 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 9 | 338 | 230 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 9 | 338 | 230 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 9 | 338 | 230 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE188589 | 224 | 3 | 226 | 0 |
HO799688 | 302 | 39 | 338 | 0 |
EX529929 | 319 | 20 | 338 | 0 |
EE168372 | 202 | 141 | 342 | 0 |
EE166411 | 194 | 149 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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