| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00019697m |
| Family | GH33 |
| Protein Properties | Length: 251 Molecular Weight: 27890.8 Isoelectric Point: 4.8421 |
| Chromosome | Chromosome/Scaffold: 0281006 Start: 192 End: 1580 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 22 | 237 | 5.7e-21 |
| SALFKSCHASTIVQIEEDNFLVAYFGGSREGAPDVKIWLQRYSDGCWHPPVVADEQDGVPMWNPVLFLLPSGELLLFYKIGQEVQKWSGAMKRSLDGGIT WSQREQLPPGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTKDAGRTWTKYGPICLEGEPLGVIQPVPYQTANGTIRVLLRSFETIGRVCIADSV DEGVTWSYVRETELPN | |||
| Full Sequence |
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| Protein Sequence Length: 251 Download |
| MTTNATSRWS IVKEEFILPA SSALFKSCHA STIVQIEEDN FLVAYFGGSR EGAPDVKIWL 60 QRYSDGCWHP PVVADEQDGV PMWNPVLFLL PSGELLLFYK IGQEVQKWSG AMKRSLDGGI 120 TWSQREQLPP GILGPIKNKP FLLEDGRLLC GSSVESWNSW GAWLEVTKDA GRTWTKYGPI 180 CLEGEPLGVI QPVPYQTANG TIRVLLRSFE TIGRVCIADS VDEGVTWSYV RETELPNPNS 240 GIDGVKMKDG R |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.004 | 108 | 247 | 155 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 3.0e-13 | 17 | 250 | 283 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 3.0e-64 | 39 | 251 | 225 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 2 | 251 | 99 | 348 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 35 | 251 | 421 | 611 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEE67268.1 | 0 | 2 | 251 | 599 | 848 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059779.1 | 0 | 2 | 251 | 99 | 348 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001159249.1 | 0 | 1 | 251 | 71 | 321 | hypothetical protein LOC100304339 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.002 | 111 | 246 | 449 | 574 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FF595784 | 232 | 20 | 251 | 0 |
| CA147481 | 223 | 29 | 250 | 0 |
| JG813383 | 227 | 25 | 251 | 0 |
| EY114510 | 245 | 7 | 251 | 0 |
| FF344386 | 201 | 51 | 251 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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