| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00019877m |
| Family | CBM53 |
| Protein Properties | Length: 1151 Molecular Weight: 131351 Isoelectric Point: 4.9644 |
| Chromosome | Chromosome/Scaffold: 028196 Start: 532 End: 7780 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 488 | 571 | 3.2e-32 |
| STIDLYFNRDLSTLANEPDILIKGAFNGWKWRFFTEKLHMSELGGDWWCCKLYIPKQAYRLDFVFFNGCTVYENNGNNDFMIQI | |||
| CBM53 | 824 | 912 | 1.8e-33 |
| GTTVDVLYNPSNTVLTGKPEVWFQCSFNRWMHPGGVLPPQKMVTVGNGAHLKATVNVPRDAYMMDFVFSELEGDGIYDNRNGLDYHIPV | |||
| CBM53 | 663 | 750 | 4.1e-34 |
| AAVRLYYNRNSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHVDYKDGDWWYADVVLPERIYVLDWVFADGPPGNARNYDNNARQDFHA | |||
| GT5 | 923 | 1150 | 0 |
| HIVHIAVEMAPIAKVGGLADVVTSLSRAVQDLGHNVEVILPKHGCLNLSNVKNLHVHQSFSFGGSEIEVWRGLVEDLCVYFLEPKNGIFGVGCVYGRNDD RRFGFFCHSALEFLLQSGSSPHILHCHDWSSAPVAWLYKENYAQSSLANARVVFTIHNLEFGAHYIGKAMRYCDKATTVSNSYSREVSGHGAITPHLGKF YGILNGIDPDIWDPYNDKFIPVHYTSEN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1151 Download |
| LQNLLLLIFS YFQALFRTSR CARSRLIRCP VASSDRPNRK SRRMVCPKIK VNAFRGYAQK 60 VTIQSSTKKS EHHGCDEETI GTYNRQLSTD VVESTSGAGA EIAKEDPLHN ASRYPIFREI 120 EEVGLDFFEA ELPGNALINI SLGELEVVDE AEVEEDKFEV DFSGIALSSA AVWELDSEDE 180 ANTKEDIFVV DLSRIASDSA VVGEVQLTYE FHEQDLSIVQ FPEQNQAIFG FQKQDISFLE 240 QKQAIVGSYK QDQSIVNSHE QDRSVDGSHC QDESIVGMHE PIRCIVDCNK SDQSIVGSYR 300 RDKSIDGSIT GVPIQIQSII AYSTSDQSIV DLPKQHQSIV HIPEQKQSIV GFHIQDLPIV 360 GNSKDSQTKQ HAIVRTHDAL LTEEENFEMI EEQKSIRVDE EQWIATKERI SMNEAEFLLL 420 LSKKESSWAE EQCKVDETSL FAEQDILDLP HDNVDPQALQ RTLQELAQKN YSLGSKLFAF 480 PEVLKADSTI DLYFNRDLST LANEPDILIK GAFNGWKWRF FTEKLHMSEL GGDWWCCKLY 540 IPKQAYRLDF VFFNGCTVYE NNGNNDFMIQ IESTMDEHLF EGFLVEEKKR ELERLAIEEA 600 ERMRQAEEQR RKAEERAEDE ADMAQAKVEV EMKKNKLHNV LGLARPSIDN LWYIEPVLTG 660 QGAAVRLYYN RNSRPLVHST EIWMHGGYNN WIDGLSFSER LVHVDYKDGD WWYADVVLPE 720 RIYVLDWVFA DGPPGNARNY DNNARQDFHA ILLNNMTEEE YWVEEEQWIY TRLQQDRRER 780 EETFKRKAER SAKLKAEMKK KTMKMFLVSQ KHIVYTEPLE IHAGTTVDVL YNPSNTVLTG 840 KPEVWFQCSF NRWMHPGGVL PPQKMVTVGN GAHLKATVNV PRDAYMMDFV FSELEGDGIY 900 DNRNGLDYHI PVFGSVAKEP PMHIVHIAVE MAPIAKVGGL ADVVTSLSRA VQDLGHNVEV 960 ILPKHGCLNL SNVKNLHVHQ SFSFGGSEIE VWRGLVEDLC VYFLEPKNGI FGVGCVYGRN 1020 DDRRFGFFCH SALEFLLQSG SSPHILHCHD WSSAPVAWLY KENYAQSSLA NARVVFTIHN 1080 LEFGAHYIGK AMRYCDKATT VSNSYSREVS GHGAITPHLG KFYGILNGID PDIWDPYNDK 1140 FIPVHYTSEN V 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 7.0e-6 | 44 | 138 | 95 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 3.0e-19 | 340 | 749 | 422 | + synthase/transferase | ||
| TIGR02095 | glgA | 1.0e-60 | 922 | 1150 | 271 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-68 | 923 | 1151 | 274 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 442 | 1151 | 711 | + synthase/transferase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86846.1 | 8e-36 | 13 | 199 | 32 | 220 | starch synthase IIIa precursor [Sorghum bicolor] |
| GenBank | ACC86846.1 | 1e-34 | 206 | 909 | 362 | 1063 | starch synthase IIIa precursor [Sorghum bicolor] |
| GenBank | ACC86846.1 | 0 | 212 | 1151 | 435 | 1465 | starch synthase IIIa precursor [Sorghum bicolor] |
| RefSeq | XP_002443985.1 | 2e-33 | 13 | 909 | 32 | 1043 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| RefSeq | XP_002443985.1 | 0 | 212 | 1151 | 415 | 1445 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0.000000000002 | 922 | 1151 | 1 | 270 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0.000000000004 | 922 | 1151 | 1 | 270 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0.000000000004 | 922 | 1151 | 1 | 270 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0.000000000004 | 922 | 1151 | 1 | 270 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0.000000000004 | 922 | 1151 | 1 | 270 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
