| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00020322m |
| Family | GH9 |
| Protein Properties | Length: 173 Molecular Weight: 18706.8 Isoelectric Point: 9.0526 |
| Chromosome | Chromosome/Scaffold: 0144166 Start: 140 End: 1432 |
| Description | glycosyl hydrolase 9B7 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH9 | 58 | 169 | 7.7e-39 |
| YGDALGVALQFFQVQKAGKLENNQIPWRGDSALTDGKEAGLDLSKGMYDAGDHMKFTFPMAFTATVLAWSVLEYGDQMSAAKQLDPALDALKWITDFLIA AHPSDNVLYIQV | |||
| Full Sequence |
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| Protein Sequence Length: 173 Download |
| MGSKYTRGCC GWLIVALIAA LVATAAMFAI MKRKPGGRGR HMKPLPVPGP PGAIDSKYGD 60 ALGVALQFFQ VQKAGKLENN QIPWRGDSAL TDGKEAGLDL SKGMYDAGDH MKFTFPMAFT 120 ATVLAWSVLE YGDQMSAAKQ LDPALDALKW ITDFLIAAHP SDNVLYIQVR VAY 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02613 | PLN02613 | 2.0e-38 | 58 | 169 | 113 | + endoglucanase | ||
| PLN02171 | PLN02171 | 2.0e-40 | 47 | 169 | 124 | + endoglucanase | ||
| PLN00119 | PLN00119 | 2.0e-45 | 52 | 169 | 119 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 2.0e-47 | 58 | 169 | 113 | + Glycosyl hydrolase family 9. | ||
| PLN02345 | PLN02345 | 2.0e-76 | 61 | 169 | 109 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84946.1 | 0 | 42 | 169 | 42 | 169 | hypothetical protein OsI_32163 [Oryza sativa Indica Group] |
| GenBank | EEE70113.1 | 0 | 42 | 169 | 42 | 169 | hypothetical protein OsJ_30126 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063771.1 | 0 | 42 | 169 | 42 | 169 | Os09g0533900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001145749.1 | 0 | 1 | 169 | 1 | 167 | hypothetical protein LOC100279256 [Zea mays] |
| RefSeq | XP_002462729.1 | 0 | 4 | 169 | 3 | 166 | hypothetical protein SORBIDRAFT_02g030990 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4tf4_B | 4e-34 | 57 | 169 | 5 | 118 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 4tf4_A | 4e-34 | 57 | 169 | 5 | 118 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3tf4_B | 4e-34 | 57 | 169 | 5 | 118 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3tf4_A | 4e-34 | 57 | 169 | 5 | 118 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1tf4_B | 4e-34 | 57 | 169 | 5 | 118 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 9 | 31 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FE628668 | 169 | 1 | 169 | 0 |
| FE635424 | 169 | 1 | 169 | 0 |
| FL748853 | 169 | 1 | 169 | 0 |
| FL757852 | 169 | 1 | 169 | 0 |
| FL692413 | 169 | 1 | 169 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma03g08040.1 | Glyma06g28630.1 | |||
| Malus domestica | MDP0000178787 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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