Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00020349m |
Family | CE8 |
Protein Properties | Length: 607 Molecular Weight: 61740.6 Isoelectric Point: 5.5762 |
Chromosome | Chromosome/Scaffold: 0144084 Start: 21 End: 2503 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 295 | 590 | 0 |
ITVAKDGTGDFRTVGEAVAAAPNNSRARTEIRVKAGTYSENVEVPPYKTNIALVGEGREKTIITGSRSAGGGWTTFRTATFGVSGEGFLARDVTFRNTAG AAAGQAVALRMNADLAAAYRCGVEAHQDALYAHSFRQFYRECAIAGTVDVVFGDAAAVLQGCALLARAPLPGQDVVLTAQGRGDPNEDTGIAVLNCTVDA AAAAAPLPAGTRTFLGRPWGAYARAAVMDSYLGPIVDREGWAEWPGAEPGRGDTVFFGEYGNGGPGAGTEGRVRWAGVRQMDYDEAAQFAVENFIY |
Full Sequence |
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Protein Sequence Length: 607 Download |
TVPRPSAAAL SPPLLLLAVL LLITAGTTQC HGHKRHHHQT GGTRRPSKAA AAESRPPAAT 60 AHHAICQKTP HPASCLAAVA SHLDAVAGAS GKAAEASAVS VQLLPPDVLS VVLASLRGAA 120 SALSSLSPAI SKLSVRAAFP TGAPLRRGAA QDCQELHAAS LSSLSRAASL LAAPGDGGGL 180 PAARAHLAAA LANKATCLDG LGGASSGPGV AGLLASFDDA YEHVSNSLAL VARGGVPSVA 240 GFANAVAKAI HNRRLLQDDD DDDNGDGDGD DGDDDSGNNG DGDSGNADQR ATKVITVAKD 300 GTGDFRTVGE AVAAAPNNSR ARTEIRVKAG TYSENVEVPP YKTNIALVGE GREKTIITGS 360 RSAGGGWTTF RTATFGVSGE GFLARDVTFR NTAGAAAGQA VALRMNADLA AAYRCGVEAH 420 QDALYAHSFR QFYRECAIAG TVDVVFGDAA AVLQGCALLA RAPLPGQDVV LTAQGRGDPN 480 EDTGIAVLNC TVDAAAAAAP LPAGTRTFLG RPWGAYARAA VMDSYLGPIV DREGWAEWPG 540 AEPGRGDTVF FGEYGNGGPG AGTEGRVRWA GVRQMDYDEA AQFAVENFIY GDEWLGATSF 600 PYDDDV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02713 | PLN02713 | 5.0e-108 | 199 | 602 | 410 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 7.0e-110 | 222 | 604 | 403 | + pectinesterase | ||
PLN03043 | PLN03043 | 7.0e-111 | 293 | 602 | 314 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
PLN02416 | PLN02416 | 1.0e-136 | 199 | 606 | 415 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-140 | 295 | 592 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAH56489.1 | 0 | 57 | 606 | 40 | 543 | pectin methylesterase 1 [Prunus persica] |
GenBank | EEE65248.1 | 0 | 57 | 606 | 52 | 550 | hypothetical protein OsJ_20428 [Oryza sativa Japonica Group] |
RefSeq | NP_001057041.1 | 0 | 57 | 606 | 52 | 585 | Os06g0193200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002436630.1 | 0 | 10 | 606 | 6 | 606 | hypothetical protein SORBIDRAFT_10g006230 [Sorghum bicolor] |
RefSeq | XP_002516192.1 | 0 | 65 | 606 | 47 | 543 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 295 | 602 | 9 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 297 | 604 | 7 | 313 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-19 | 305 | 584 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-19 | 305 | 584 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-19 | 305 | 584 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |