Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00020445m |
Family | CE8 |
Protein Properties | Length: 365 Molecular Weight: 37698 Isoelectric Point: 8.777 |
Chromosome | Chromosome/Scaffold: 0145972 Start: 1042 End: 2246 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 249 | 342 | 1.8e-27 |
VTGSVTAQGRASPADRTGFAFVRCSVVGTGQVWLGRPWGAYATVVFARTYLAGVVAPGGWNDPARQQTVLFGEYDCTGPGASGGGAAQRVAYAR | |||
CE8 | 93 | 240 | 1.4013e-45 |
LTVDRRGCANFTSLQKAVDAVPDGAAARTLIAVDAGVYAEKVAVWSSKTGVTVQGRGNLETTVAWNGTANSSGGTSASATFAVLADGFVAYNLSVQNTAR PAEPGDAGGQAVALRVAGDQAAFYWCGFYGSQDTLLDERGRHLFRDSV |
Full Sequence |
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Protein Sequence Length: 365 Download |
MRLAGRRRTG RTARAAAKPL VVLWAASAIC SALVALPLAS TSFYLQQQQP PPDSDTSTGA 60 AEEGRHHHRR RACDDHARWV AKIVSLHNAS LVLTVDRRGC ANFTSLQKAV DAVPDGAAAR 120 TLIAVDAGVY AEKVAVWSSK TGVTVQGRGN LETTVAWNGT ANSSGGTSAS ATFAVLADGF 180 VAYNLSVQNT ARPAEPGDAG GQAVALRVAG DQAAFYWCGF YGSQDTLLDE RGRHLFRDSV 240 ASAAAGGAVT GSVTAQGRAS PADRTGFAFV RCSVVGTGQV WLGRPWGAYA TVVFARTYLA 300 GVVAPGGWND PARQQTVLFG EYDCTGPGAS GGGAAQRVAY ARQPGDDGII SAAEYDANTM 360 AGSM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-55 | 90 | 347 | 279 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-59 | 91 | 343 | 281 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-61 | 92 | 349 | 281 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 8.0e-67 | 90 | 347 | 286 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 9.0e-77 | 88 | 346 | 288 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 73 | 343 | 86 | 378 | unnamed protein product [Vitis vinifera] |
GenBank | EEC85099.1 | 0 | 45 | 343 | 150 | 469 | hypothetical protein OsI_32473 [Oryza sativa Indica Group] |
RefSeq | NP_001063991.1 | 0 | 37 | 343 | 39 | 371 | Os09g0571100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002264941.1 | 0 | 86 | 343 | 8 | 288 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002459865.1 | 0 | 41 | 343 | 43 | 377 | hypothetical protein SORBIDRAFT_02g012560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 1e-31 | 95 | 340 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 6e-27 | 99 | 333 | 15 | 277 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 0.00001 | 103 | 287 | 44 | 230 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.006 | 103 | 238 | 18 | 167 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.006 | 103 | 238 | 18 | 167 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |