| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00020712m |
| Family | GT19 |
| Protein Properties | Length: 313 Molecular Weight: 34710.6 Isoelectric Point: 9.2024 |
| Chromosome | Chromosome/Scaffold: 014207 Start: 579 End: 4211 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT19 | 41 | 309 | 0 |
| VFVVAGEVSGDSLASRLMASLKALSPVPVRFAGVGGELMCKEGLQSLFPMEEIAIMGLWELLPHIYSVKKKIENTVNAAMLFQPHAVVTVDSKGFSFRLL KQLKCRSNQKVQSPLHIHYVSPSFWAWKGGESRLSKLHDFVDHMLCILPFEEEICRLNGLPATYVGHPLLDDAIGLNMGPELSYDNSKHQKSCEAIRLEH GLSSDATIITIMPGSRMQEVVRMLPIFLHSVQNLRHTFHELSLVIPVAPHRDVRTYVEKAVQSGPFPVV | |||
| Full Sequence |
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| Protein Sequence Length: 313 Download |
| MLLRWIAAAG RRRALPAKPL ARALSYGRVV DAAARDGELR VFVVAGEVSG DSLASRLMAS 60 LKALSPVPVR FAGVGGELMC KEGLQSLFPM EEIAIMGLWE LLPHIYSVKK KIENTVNAAM 120 LFQPHAVVTV DSKGFSFRLL KQLKCRSNQK VQSPLHIHYV SPSFWAWKGG ESRLSKLHDF 180 VDHMLCILPF EEEICRLNGL PATYVGHPLL DDAIGLNMGP ELSYDNSKHQ KSCEAIRLEH 240 GLSSDATIIT IMPGSRMQEV VRMLPIFLHS VQNLRHTFHE LSLVIPVAPH RDVRTYVEKA 300 VQSGPFPVVL IPG |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK01021 | lpxB | 6.0e-37 | 42 | 273 | 233 | + lipid-A-disaccharide synthase; Reviewed | ||
| TIGR00215 | lpxB | 1.0e-40 | 41 | 287 | 247 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 6.0e-55 | 41 | 289 | 250 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| COG0763 | LpxB | 6.0e-73 | 39 | 313 | 276 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| PRK00025 | lpxB | 1.0e-75 | 39 | 313 | 277 | + lipid-A-disaccharide synthase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC71491.1 | 0 | 1 | 313 | 1 | 317 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
| RefSeq | NP_001044267.1 | 0 | 1 | 313 | 1 | 317 | Os01g0752600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001140462.1 | 0 | 1 | 313 | 1 | 313 | hypothetical protein LOC100272521 [Zea mays] |
| RefSeq | XP_002458499.1 | 0 | 21 | 313 | 1 | 293 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| RefSeq | XP_002528957.1 | 0 | 29 | 313 | 36 | 321 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | LIPIDADISACCHARIDESYNTH-RXN | EC-2.4.1.182 | lipid-A-disaccharide synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DV519136 | 278 | 1 | 278 | 0 |
| DT652350 | 272 | 1 | 272 | 0 |
| DR962527 | 264 | 1 | 264 | 0 |
| DR969018 | 261 | 1 | 261 | 0 |
| EC878319 | 241 | 1 | 241 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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