y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00020813m |
Family | GT47 |
Protein Properties | Length: 497 Molecular Weight: 55294.4 Isoelectric Point: 10.1425 |
Chromosome | Chromosome/Scaffold: 0142694 Start: 357 End: 2186 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 111 | 434 | 0 |
AALRVYVYDLPAEFHFGMLGWDGKGEAAWPDVRAAPHYPGGLNLQHSVAYWLALDILSSTLPPGGGGAARGGRPCVAVRVTNASLADVFFVPFFASLSYN RHSKLRRGERVSRNRALQAELVKYLARREEWRRWGGKDHLIVPHHPNSMMEARKKLSAAMFVLSDFGRYSPDVANLKKDVIAPYNHVVRSLGDDESPAFD QRPVLAYFQGAIHRKAGGKVRQKLYQLLKGERDVHFTYGSVRQNGIRRATAGMSTSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDDIELPFEDVLDYS EFCVFVRAADAARKGFLLRLLRGV |
Full Sequence |
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Protein Sequence Length: 497 Download |
MQPLPPPEHR RALRFVAFLA VSLLAFSCWA LVSSRINDAV PDSAALVGDV DKMPALAGEE 60 GARRPTPPAS ASVPASGGAV KLMSDPVIRE PQVRGGGWEG ELSWRCDADT AALRVYVYDL 120 PAEFHFGMLG WDGKGEAAWP DVRAAPHYPG GLNLQHSVAY WLALDILSST LPPGGGGAAR 180 GGRPCVAVRV TNASLADVFF VPFFASLSYN RHSKLRRGER VSRNRALQAE LVKYLARREE 240 WRRWGGKDHL IVPHHPNSMM EARKKLSAAM FVLSDFGRYS PDVANLKKDV IAPYNHVVRS 300 LGDDESPAFD QRPVLAYFQG AIHRKAGGKV RQKLYQLLKG ERDVHFTYGS VRQNGIRRAT 360 AGMSTSKFCL NIAGDTPSSN RLFDAIVSHC VPVIISDDIE LPFEDVLDYS EFCVFVRAAD 420 AARKGFLLRL LRGVPRDEWT RMWRRLKEVA RHFEYQYPSR PGDAVQMIWG AVARKMHSVK 480 LQLHKRGRFQ RTGWES* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-58 | 113 | 429 | 326 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83632.1 | 0 | 8 | 496 | 70 | 566 | hypothetical protein OsI_29363 [Oryza sativa Indica Group] |
RefSeq | NP_001061895.1 | 0 | 8 | 496 | 70 | 566 | Os08g0438600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002284930.1 | 0 | 106 | 492 | 66 | 448 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002284932.1 | 0 | 106 | 492 | 27 | 409 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002444408.1 | 0 | 1 | 496 | 11 | 539 | hypothetical protein SORBIDRAFT_07g021480 [Sorghum bicolor] |