| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00020824m |
| Family | GH51 |
| Protein Properties | Length: 668 Molecular Weight: 73657.9 Isoelectric Point: 5.0909 |
| Chromosome | Chromosome/Scaffold: 014410 Start: 813 End: 7195 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 188 | 541 | 0 |
| NLASATVTVSGTSNWTKLEQKLVAKGTNRTSRLQITTNKKGVVWFDQVSLMPEDTYKGHGFRTELISMLLDLKPRFLRFPGGCFVEGDWLRNAFRWRESI GPWEERPGHFGDVWHYWTDDGLGYYEFLQLAEDLGAAPIWVFNNGVSHNDEVDTVAIAPFVKDVLDSLEFARGSANSTWGSVRASMGHPEPFPVKYVAIG NEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSKPLDHPADLYDFHVYTDSKTLFNMRSTFDRTSRSGPKAFVSEYAVWRSDAGRGSLLASLSEAA FLTGLEKNSDIVQMASYAPLFVNNNDQTWNPDAIVFNSWQHYGTPSYWMQTLFR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 668 Download |
| MGSIRDYKWK RMGTNEASPP TVLCLFFLFC LGCKCLASEF EATQTATLKV DASPQLARKI 60 PDTLFGIFFE EINHAGAGGI WAELVSNRGF EAGGPHTPSN IDPWSIIGDD SSIFVATDRT 120 SCFSRNIVSL RMEVLCDDCP AGGVGIYNPG FWGMNIEDGK TYNLVMYVKS PETTDLTVSL 180 TSADGSQNLA SATVTVSGTS NWTKLEQKLV AKGTNRTSRL QITTNKKGVV WFDQVSLMPE 240 DTYKGHGFRT ELISMLLDLK PRFLRFPGGC FVEGDWLRNA FRWRESIGPW EERPGHFGDV 300 WHYWTDDGLG YYEFLQLAED LGAAPIWVFN NGVSHNDEVD TVAIAPFVKD VLDSLEFARG 360 SANSTWGSVR ASMGHPEPFP VKYVAIGNED CGKKFYRGNY LKFYNAIRQA YPDIQMISNC 420 DGSSKPLDHP ADLYDFHVYT DSKTLFNMRS TFDRTSRSGP KAFVSEYAVW RSDAGRGSLL 480 ASLSEAAFLT GLEKNSDIVQ MASYAPLFVN NNDQTWNPDA IVFNSWQHYG TPSYWMQTLF 540 RESSGAMIHP IKISSSYSSS LAASAITWQD SENSFLRVKV VNFGSDAVSL TISITGLQAS 600 VNALGSTTTV LTSGNVMDEN SFSNPNKVVP VKSELSNATE QMQVPLAPRS FSAFDLALAQ 660 SKLVAEM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.009 | 82 | 224 | 147 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3534 | AbfA | 0.0002 | 570 | 652 | 85 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 5.0e-29 | 247 | 394 | 153 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 4.0e-30 | 490 | 650 | 170 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 7.0e-43 | 465 | 650 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27961.1 | 0 | 12 | 667 | 1 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 2 | 667 | 12 | 680 | unknown [Zea mays] |
| RefSeq | NP_001065660.1 | 0 | 12 | 667 | 1 | 658 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148977.1 | 0 | 2 | 667 | 12 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 12 | 667 | 1 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 1e-24 | 247 | 658 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 1e-24 | 247 | 658 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 1e-24 | 247 | 658 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 1e-24 | 247 | 658 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 1e-24 | 247 | 658 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
