y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00020990m |
Family | GT8 |
Protein Properties | Length: 381 Molecular Weight: 42230.2 Isoelectric Point: 7.2722 |
Chromosome | Chromosome/Scaffold: 014325 Start: 3640 End: 4974 |
Description | galacturonosyltransferase 15 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 29 | 350 | 0 |
CLTLRLAEEFAVNSAARSPVPPPEHAPRLTDASYLHVALVTDNVLAAAVAVASAARSAADPGRLVFHVVTDKKSYVPMHSWFALHPASPAVVEVKGLHQF DWRDGGVIASVMRTVEEVQRSSLDYHRCGGSAEREHRRLEASNPSTFSLLNYLKIHLPEFFPELGRVMLLDDDVVVRKDLTGLWEQDLDGNIIGAVGSHD GGGICADKTFGDHLNFSEPAVSGLLGSQCAWSWGVNIVDLDAWRRTNVTETYQLWLQKNRESGFRLWQMASLPPALIAFDGRVQAIEPLWHLPGLGWRVP DPEVARFSAVLHFSGPRKPWLE |
Full Sequence |
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Protein Sequence Length: 381 Download |
MDRKVKKSRV RALFNRHLAS LGVPKSVHCL TLRLAEEFAV NSAARSPVPP PEHAPRLTDA 60 SYLHVALVTD NVLAAAVAVA SAARSAADPG RLVFHVVTDK KSYVPMHSWF ALHPASPAVV 120 EVKGLHQFDW RDGGVIASVM RTVEEVQRSS LDYHRCGGSA EREHRRLEAS NPSTFSLLNY 180 LKIHLPEFFP ELGRVMLLDD DVVVRKDLTG LWEQDLDGNI IGAVGSHDGG GICADKTFGD 240 HLNFSEPAVS GLLGSQCAWS WGVNIVDLDA WRRTNVTETY QLWLQKNRES GFRLWQMASL 300 PPALIAFDGR VQAIEPLWHL PGLGWRVPDP EVARFSAVLH FSGPRKPWLE VAFPELRQLW 360 LGHLNASDSF LRGCGVVEWQ * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02742 | PLN02742 | 3.0e-66 | 18 | 374 | 361 | + Probable galacturonosyltransferase | ||
cd06429 | GT8_like_1 | 2.0e-80 | 89 | 365 | 278 | + GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. | ||
PLN02659 | PLN02659 | 7.0e-102 | 1 | 376 | 391 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 1.0e-107 | 1 | 378 | 392 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 4.0e-123 | 1 | 374 | 394 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34134.1 | 0 | 1 | 380 | 59 | 438 | unknown [Zea mays] |
GenBank | EEC71413.1 | 0 | 1 | 378 | 137 | 518 | hypothetical protein OsI_03591 [Oryza sativa Indica Group] |
GenBank | EEE55323.1 | 0 | 1 | 378 | 249 | 645 | hypothetical protein OsJ_03323 [Oryza sativa Japonica Group] |
RefSeq | NP_001044121.1 | 0 | 1 | 378 | 155 | 536 | Os01g0727100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002456278.1 | 0 | 1 | 380 | 92 | 473 | hypothetical protein SORBIDRAFT_03g033400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.0000004 | 171 | 348 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.000004 | 171 | 348 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.000004 | 171 | 348 | 75 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL897009 | 235 | 89 | 322 | 0 |
FL902042 | 216 | 89 | 304 | 0 |
CB656533 | 191 | 1 | 191 | 0 |
CA733384 | 207 | 152 | 352 | 0 |
DN208918 | 150 | 235 | 381 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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