Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00021342m |
Family | GH35 |
Protein Properties | Length: 830 Molecular Weight: 92927.1 Isoelectric Point: 8.9294 |
Chromosome | Chromosome/Scaffold: 014540 Start: 2718 End: 6990 |
Description | glycosyl hydrolase family 35 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 25 | 329 | 0 |
LMVDGRREIFFSGSIHYPRSPPDMWPDLIAKAKEGGLNVIESYVFWNIHEPEKGVLNFEGRYDMVKFFKMIQDNDMYAVVRIGPFIQAEWNHGGLPYWLR EVPDIVFRTNNEPFKTHMEKFVNLIVKKLKDANLFASQGGPIILAQIENEYQHLEAAFKEEGTKYINWAAKMAQATNTGVPWIMCKQTKAPGEVIPTCNG RNCGDTWPGPVNKTKPLLWTENWTAQYRVFGDPPSQRSAEDIAFAVARFFSVGGTMTNYYMYHGGTNFGRTAAAFVMPKYYDEAPLDEFGLYKEPKWGHL RDLHQ |
Full Sequence |
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Protein Sequence Length: 830 Download |
MASGAAAAWE LTKKGTVVSY DRRSLMVDGR REIFFSGSIH YPRSPPDMWP DLIAKAKEGG 60 LNVIESYVFW NIHEPEKGVL NFEGRYDMVK FFKMIQDNDM YAVVRIGPFI QAEWNHGGLP 120 YWLREVPDIV FRTNNEPFKT HMEKFVNLIV KKLKDANLFA SQGGPIILAQ IENEYQHLEA 180 AFKEEGTKYI NWAAKMAQAT NTGVPWIMCK QTKAPGEVIP TCNGRNCGDT WPGPVNKTKP 240 LLWTENWTAQ YRVFGDPPSQ RSAEDIAFAV ARFFSVGGTM TNYYMYHGGT NFGRTAAAFV 300 MPKYYDEAPL DEFGLYKEPK WGHLRDLHQA LKLCKKALLW GTMSTQPLGK QFEARVFEIK 360 DQNVCVAFLS NHNTKDDVTL TFRGQPYFVP RHSISILADC KTVVFSTQHV NSQHNQRTFH 420 FADQTVQNNV WQMTRKAEEL YNLTKDKTDY VWYTTSFKLE SDDMPFRRDT RPVLEVNSHG 480 HASVAFVNNA FVGCGHGTKM NKAFMLQKPM DLKKGVNHIA VLASTLGMMD SGAYLEHREA 540 GIDRVQITGL NAGTLDLTNN GWGHIVGLGG EQKEIYTEKG MGSVAWKPAV KDKPLSWYKR 600 NFDMPSGDDP VVLDLSPMGK GMMFVNGEGI GRYWISYKHA LGRPSQQLYH VPRSFLREKN 660 NVLVLFEEEG GNPEAIMILT VKRDNICTFI SEKNPAHIKS WQREDSQITA RAGGDLKPQA 720 TLTCPPKKVI QQVVFASFGN PQGICGNYTA GSCHTPRAHE VAAKACVGQR TCTLPVSADA 780 YGGDLKCPGT TATLAVQAKC SKRAPGAPPP PRNDQLLLNQ RRLAGSTSW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 0.0002 | 45 | 175 | 149 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 3.0e-19 | 722 | 800 | 83 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 7.0e-21 | 18 | 175 | 169 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 5.0e-139 | 24 | 331 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 18 | 801 | 829 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL54349.1 | 0 | 9 | 807 | 34 | 848 | unknown [Zea mays] |
GenBank | EEE69115.1 | 0 | 10 | 805 | 25 | 841 | hypothetical protein OsJ_28192 [Oryza sativa Japonica Group] |
GenBank | EEE70132.1 | 0 | 9 | 800 | 27 | 830 | hypothetical protein OsJ_30164 [Oryza sativa Japonica Group] |
RefSeq | NP_001062440.1 | 0 | 10 | 805 | 25 | 841 | Os08g0549200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002445734.1 | 0 | 12 | 807 | 32 | 841 | hypothetical protein SORBIDRAFT_07g024870 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 7e-40 | 22 | 327 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 1e-36 | 12 | 332 | 5 | 335 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 1e-36 | 12 | 332 | 5 | 335 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 701 | 18 | 678 | 0 |
FL816792 | 255 | 420 | 659 | 0 |
FL805036 | 258 | 324 | 566 | 0 |
DV168211 | 278 | 379 | 641 | 0 |
CO128575 | 297 | 47 | 343 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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