| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00021975m |
| Family | GH51 |
| Protein Properties | Length: 209 Molecular Weight: 22387 Isoelectric Point: 4.4326 |
| Chromosome | Chromosome/Scaffold: 0145568 Start: 625 End: 1964 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 2 | 197 | 3.8e-34 |
| QAFVSEYAVWRSDAGRGSLLASLAEAAFLTGLEKNSDIVQMASYAPLFVNDNDRTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMVHPITVNSSYSGS LAASAITWQDSENSFLRVKVVNFGSDAVSLIISTSGLQASVNALGSTTTVLTSGNVIDENSFSNPNKVVPVKSELSNAAEQMQVTLAPHSFSAFDL | |||
| Full Sequence |
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| Protein Sequence Length: 209 Download |
| MQAFVSEYAV WRSDAGRGSL LASLAEAAFL TGLEKNSDIV QMASYAPLFV NDNDRTWNPD 60 AIVFNSWQHY GTPSYWMQTL FRESSGAMVH PITVNSSYSG SLAASAITWQ DSENSFLRVK 120 VVNFGSDAVS LIISTSGLQA SVNALGSTTT VLTSGNVIDE NSFSNPNKVV PVKSELSNAA 180 EQMQVTLAPH SFSAFDLALA QSKLVAEM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 6.0e-5 | 35 | 193 | 175 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 1.0e-35 | 6 | 191 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 5.0e-49 | 6 | 191 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF86832.2 | 0 | 2 | 208 | 224 | 430 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 2 | 208 | 474 | 680 | unknown [Zea mays] |
| RefSeq | NP_001066062.1 | 0 | 2 | 208 | 454 | 660 | Os12g0128700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148977.1 | 0 | 2 | 208 | 474 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 2 | 208 | 450 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG957463 | 208 | 2 | 209 | 0 |
| DN152560 | 208 | 2 | 209 | 0 |
| JG957844 | 208 | 2 | 209 | 0 |
| JG891613 | 208 | 2 | 209 | 0 |
| JG876675 | 208 | 2 | 209 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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