y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00022245m |
Family | AA3 |
Protein Properties | Length: 582 Molecular Weight: 62997.3 Isoelectric Point: 6.7045 |
Chromosome | Chromosome/Scaffold: 003139 Start: 5029 End: 7646 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 42 | 567 | 0 |
QAANVSYYDYIIVGGGTAGCPLAATLSERFRVLLLERGGSPYGDERVEDMTRFTDTLADTSPGSPVQRFVSEDGVINSRPRVLGGGSCINAGFYTRAGDD YVRAAGWDLEATGAAYRWVEDVVAFHPELGPWQAALQGGLLESGVTPDNGFTFDHLDGTKVGGSIFDADGRRHTAADLLRYARADGLDVLLWARVAKILF NVRGRRPVARGVVFHDSKGRMHKAYLNAGRGNEIILSAGAMGSPQLLMLSGVGPVDHLRSFGITLVHDQPEVGQGMADNPMNAIYVPSPSPVEISLIQVV GISQVGSYIEGSSGARHSASPRNFGMFSPQTGQLATVPPKQRTPEAIARAAETMRQLDDSAFRGGFILEKILGPLSTGHLELRNLNPDDNPSVTFNYFSH PEDLRRCVAGLSVIERVIQSKAFENFTYPSFSMERLLNMSTGFPVNLLPRHDNDTTSLEQFCRDTVMTIWHYHGGCQVGRVVDAEYRVLGVDALRVIDGS TFNASPGTNPQATVMMLGRYMGLKIQ |
Full Sequence |
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Protein Sequence Length: 582 Download |
MAANQLFSRE LVTFVAATFF ALLCSSPQVR GVDYAFMKDA TQAANVSYYD YIIVGGGTAG 60 CPLAATLSER FRVLLLERGG SPYGDERVED MTRFTDTLAD TSPGSPVQRF VSEDGVINSR 120 PRVLGGGSCI NAGFYTRAGD DYVRAAGWDL EATGAAYRWV EDVVAFHPEL GPWQAALQGG 180 LLESGVTPDN GFTFDHLDGT KVGGSIFDAD GRRHTAADLL RYARADGLDV LLWARVAKIL 240 FNVRGRRPVA RGVVFHDSKG RMHKAYLNAG RGNEIILSAG AMGSPQLLML SGVGPVDHLR 300 SFGITLVHDQ PEVGQGMADN PMNAIYVPSP SPVEISLIQV VGISQVGSYI EGSSGARHSA 360 SPRNFGMFSP QTGQLATVPP KQRTPEAIAR AAETMRQLDD SAFRGGFILE KILGPLSTGH 420 LELRNLNPDD NPSVTFNYFS HPEDLRRCVA GLSVIERVIQ SKAFENFTYP SFSMERLLNM 480 STGFPVNLLP RHDNDTTSLE QFCRDTVMTI WHYHGGCQVG RVVDAEYRVL GVDALRVIDG 540 STFNASPGTN PQATVMMLGR YMGLKIQSKR LKAEGSAGTK L* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 1.0e-14 | 415 | 559 | 150 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 1.0e-29 | 49 | 319 | 319 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 3.0e-37 | 50 | 559 | 564 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 7.0e-49 | 49 | 560 | 555 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 4 | 575 | 576 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY87068.1 | 0 | 14 | 576 | 4 | 579 | hypothetical protein OsI_08464 [Oryza sativa Indica Group] |
RefSeq | NP_001053612.1 | 0 | 1 | 575 | 1 | 585 | Os04g0573100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146691.1 | 0 | 19 | 580 | 19 | 598 | hypothetical protein LOC100280292 [Zea mays] |
RefSeq | XP_002446965.1 | 0 | 1 | 581 | 1 | 595 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
RefSeq | XP_002454481.1 | 0 | 1 | 574 | 1 | 583 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |