Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00022362m |
Family | GH17 |
Protein Properties | Length: 325 Molecular Weight: 35012 Isoelectric Point: 9.783 |
Chromosome | Chromosome/Scaffold: 003031 Start: 12180 End: 13154 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 2 | 298 | 0 |
SGSNLPPASTVINMFKENGIKAMRLYAPDKAALQALNGTSIVVVVGAPNDVLSNLSGKKAAASWVRDNIQAYPSVKFRYVAVGNEVVGKPADLLAPAMEN VHAALAAAKLGHIQVTTSVSQAIVGVFNQPSAANFTKEAKVFMRPVLKFLARTDAPLRANIYPYFTYAYNPSDMDVRYALFTAPATMVKDGKYNYQNLFD TAIDAFYEAMSKLGVSNVSVLVSETGWPSGGGKAASPNNAKIYNENLIKHIRGGTPRHPDAIKTYLFSMFNENQKPKGVEQNWGLFYPNMKPVYRIS |
Full Sequence |
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Protein Sequence Length: 325 Download |
MSGSNLPPAS TVINMFKENG IKAMRLYAPD KAALQALNGT SIVVVVGAPN DVLSNLSGKK 60 AAASWVRDNI QAYPSVKFRY VAVGNEVVGK PADLLAPAME NVHAALAAAK LGHIQVTTSV 120 SQAIVGVFNQ PSAANFTKEA KVFMRPVLKF LARTDAPLRA NIYPYFTYAY NPSDMDVRYA 180 LFTAPATMVK DGKYNYQNLF DTAIDAFYEA MSKLGVSNVS VLVSETGWPS GGGKAASPNN 240 AKIYNENLIK HIRGGTPRHP DAIKTYLFSM FNENQKPKGV EQNWGLFYPN MKPVYRISLD 300 ATPDPHSPAP APVPESPAAA PHSY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 7.0e-8 | 24 | 290 | 283 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 3.0e-121 | 1 | 298 | 304 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PRF/SEQDB | 0 | 1 | 299 | 35 | 334 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
PDB | 1AQ0 | 0 | 1 | 299 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
GenBank | AAK16694.1 | 0 | 1 | 299 | 35 | 334 | AF323610_1 glucanase [Oryza sativa] |
GenBank | AAV37460.1 | 0 | 1 | 299 | 35 | 334 | endo-1,3;1,4-beta-glucanase [Oryza sativa Japonica Group] |
RefSeq | NP_001055377.1 | 0 | 1 | 299 | 35 | 334 | Os05g0375400 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 1 | 299 | 7 | 306 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 1aq0_B | 0 | 1 | 299 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 1 | 299 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 1 | 299 | 7 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 1 | 299 | 8 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CB673940 | 269 | 1 | 268 | 0 |
CB654106 | 257 | 44 | 299 | 0 |
CB644222 | 257 | 44 | 299 | 0 |
CB670461 | 260 | 1 | 259 | 0 |
CB670194 | 263 | 18 | 279 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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