Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00022526m |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 46409.4 Isoelectric Point: 7.4391 |
Chromosome | Chromosome/Scaffold: 002612 Start: 11291 End: 12992 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 378 | 0 |
RAACGSTAGNSTLVFPKGTFAVGAVQFEGPCANRGAPAVVIHGVLQPCAGGGGCHLSDDAWITFSGLNNLLITGDCTFDGQGHRSGKPKSKTTTLVLEDV TNSMLRGLAFVNSRGFHVNLRRCTGVVAEGLGIHAPAASRNTDGVHVGHSRHVRILDSVIGTGDDCVSVGPGSVDVVVSGVTCGPGHGLSVGSLGKDGGE QDVRGLVIRNCTVKGTTNGVRIKTWPGSPPSRASNITFEDIAMANVTNPIIIDQRYCPHDRCSDADKISDVTFRRIEGTSSGPLAVRLLCSEERPCTGVR LDDINLTCGDVPCRSEFSNV |
Full Sequence |
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Protein Sequence Length: 446 Download |
MPSIPKALVV FFAVAALLCG GHAHRKDHAA SVYDVTQYGA APSNRDNRDV SAAFLAAWRA 60 ACGSTAGNST LVFPKGTFAV GAVQFEGPCA NRGAPAVVIH GVLQPCAGGG GCHLSDDAWI 120 TFSGLNNLLI TGDCTFDGQG HRSGKPKSKT TTLVLEDVTN SMLRGLAFVN SRGFHVNLRR 180 CTGVVAEGLG IHAPAASRNT DGVHVGHSRH VRILDSVIGT GDDCVSVGPG SVDVVVSGVT 240 CGPGHGLSVG SLGKDGGEQD VRGLVIRNCT VKGTTNGVRI KTWPGSPPSR ASNITFEDIA 300 MANVTNPIII DQRYCPHDRC SDADKISDVT FRRIEGTSSG PLAVRLLCSE ERPCTGVRLD 360 DINLTCGDVP CRSEFSNVRG PLVPVVAPAP APGSSPTAAA GGEEEEADVA SRVSQQLGRL 420 TWWLPLTVRG FVQEGTTKTE GRLIF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-54 | 30 | 364 | 343 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-56 | 32 | 364 | 352 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-56 | 29 | 373 | 362 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-75 | 62 | 368 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-88 | 20 | 379 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD62225.1 | 0 | 1 | 409 | 1 | 420 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
EMBL | CBI22963.1 | 0 | 29 | 365 | 28 | 376 | unnamed protein product [Vitis vinifera] |
GenBank | EAZ01129.1 | 0 | 1 | 409 | 1 | 408 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
GenBank | EEE65794.1 | 0 | 1 | 409 | 1 | 420 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
RefSeq | XP_002444632.1 | 0 | 19 | 379 | 22 | 383 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 109 | 366 | 96 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-17 | 120 | 373 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-17 | 120 | 373 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-17 | 120 | 373 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-17 | 120 | 373 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |