Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00022563m |
Family | GH28 |
Protein Properties | Length: 455 Molecular Weight: 47609.7 Isoelectric Point: 8.495 |
Chromosome | Chromosome/Scaffold: 003637 Start: 668 End: 2183 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 425 | 0 |
AQACSSAQPAVVLVPAGRSYLLGETSLSGPCKSRVTFRLDGTLVAPEDKSGWGKPGSLPRWIVFRGVDGLTVTGEGALDGRGESSWRNSCRTNPAMPCTV APSALTFASCDRLAVDGITLLNAPQIHLWVERCRDATLSGLTIASPGDSPENDGIHVARSDGVRILGARIATGDDCLSVATGTANLYAAGIECGPGHGIS IGSLGRGGSRAEVSNVTVDGASVSGTMFGARIKTWQGGSGFVRGVRFLNMAMDRVKYPILIDQSYCTRPHPNDTAACDRQQQSGRSSAVEVSDVVFGNIW GTTVARDAIRLHCSEAFPCRDVVLRDVQLRTRKGGDKNAATSSCENA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MASRTLLATA CLLVLLLLTL GGAPVEARAR RGPRWAPRRT PESSSVDGYA TTATFDVGSF 60 GAAGDGTTDD TAAFQKAWAQ ACSSAQPAVV LVPAGRSYLL GETSLSGPCK SRVTFRLDGT 120 LVAPEDKSGW GKPGSLPRWI VFRGVDGLTV TGEGALDGRG ESSWRNSCRT NPAMPCTVAP 180 SALTFASCDR LAVDGITLLN APQIHLWVER CRDATLSGLT IASPGDSPEN DGIHVARSDG 240 VRILGARIAT GDDCLSVATG TANLYAAGIE CGPGHGISIG SLGRGGSRAE VSNVTVDGAS 300 VSGTMFGARI KTWQGGSGFV RGVRFLNMAM DRVKYPILID QSYCTRPHPN DTAACDRQQQ 360 SGRSSAVEVS DVVFGNIWGT TVARDAIRLH CSEAFPCRDV VLRDVQLRTR KGGDKNAATS 420 SCENAVLAES SNVSPAPCSS AATKKNFVRR RVHH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-74 | 74 | 432 | 361 | + polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-80 | 42 | 438 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 82 | 438 | 357 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-93 | 51 | 435 | 387 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-94 | 55 | 452 | 399 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 55 | 430 | 53 | 415 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 1 | 443 | 1 | 428 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 1 | 443 | 1 | 428 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002463688.1 | 0 | 53 | 438 | 60 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 55 | 440 | 75 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 150 | 407 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-17 | 90 | 425 | 26 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 90 | 425 | 26 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 90 | 425 | 26 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 90 | 425 | 26 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |