| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00022623m |
| Family | CBM57 |
| Protein Properties | Length: 227 Molecular Weight: 24833.4 Isoelectric Point: 8.4583 |
| Chromosome | Chromosome/Scaffold: 002978 Start: 3271 End: 4405 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 33 | 149 | 3.7e-24 |
| DPFSKSPGIVHDILETDMLELYKTARTSTGALRYYVVGLANGKYTIQLFFAEIVIVDGPGRRVFDIDIQDRNIRKDFDIAKEAGGSRKPTNITHEVIVDN TILVIHLYWSGRGTCCI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 227 Download |
| MPTVFSEDST DLGGAGFHVN TTSHWVVSHV GSDPFSKSPG IVHDILETDM LELYKTARTS 60 TGALRYYVVG LANGKYTIQL FFAEIVIVDG PGRRVFDIDI QDRNIRKDFD IAKEAGGSRK 120 PTNITHEVIV DNTILVIHLY WSGRGTCCIP YEGAYGPLVS AIKVTRFQDP KISPPQAPHS 180 GSSRQDEKRR GIIAGIAALC IAAAVISSSV VYLWWKWVSL VKRPMG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03150 | PLN03150 | 2.0e-8 | 53 | 164 | 116 | + hypothetical protein; Provisional | ||
| pfam11721 | Malectin | 1.0e-39 | 31 | 162 | 135 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC80088.1 | 0 | 3 | 222 | 386 | 603 | hypothetical protein OsI_21825 [Oryza sativa Indica Group] |
| RefSeq | NP_001056921.1 | 0 | 3 | 222 | 459 | 676 | Os06g0167500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002324865.1 | 6.00036e-42 | 5 | 195 | 365 | 556 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002436559.1 | 0 | 1 | 226 | 337 | 564 | hypothetical protein SORBIDRAFT_10g004730 [Sorghum bicolor] |
| RefSeq | XP_002515504.1 | 3.99931e-42 | 5 | 195 | 666 | 857 | ATP binding protein, putative [Ricinus communis] |
