Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00022627m |
Family | GH3 |
Protein Properties | Length: 643 Molecular Weight: 68143.1 Isoelectric Point: 6.3946 |
Chromosome | Chromosome/Scaffold: 002291 Start: 8086 End: 10693 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 118 | 350 | 0 |
LSTRLGIPVLYGIDAVHGHGNAYKATIFPHNVGLGCTRDPELVKRIGAAVAVEVRATGIPYIFAPCVCRDPRWGRCYESFGERPELVQNMTSIVSGFQGE IPAGGRKGAPFVAGQRNVAACAKHYVGDGGTAGGINANDTVATFHELLAVHMPPYYNAVIRGVSTVMVSYSTWNGVKMHAHHFLITDFLKKQLRFRGFVI SDYQGLDFITDPEHADYLLSIKLGILAGIDMVM |
Full Sequence |
---|
Protein Sequence Length: 643 Download |
MGVVPAAAVV TAAAAAVVLL RLCACGVAAV AAGAGGDGAK YKDPTQPLNA RIDDLLRRMT 60 LAEKVGQMSQ IEREMATPDV ISNYFIGSVL SGGGSVPAAN APPEAWVEMV NGMQGGALST 120 RLGIPVLYGI DAVHGHGNAY KATIFPHNVG LGCTRDPELV KRIGAAVAVE VRATGIPYIF 180 APCVCRDPRW GRCYESFGER PELVQNMTSI VSGFQGEIPA GGRKGAPFVA GQRNVAACAK 240 HYVGDGGTAG GINANDTVAT FHELLAVHMP PYYNAVIRGV STVMVSYSTW NGVKMHAHHF 300 LITDFLKKQL RFRGFVISDY QGLDFITDPE HADYLLSIKL GILAGIDMVM IPFNYTEFID 360 GLTLLVQNGT IPMSRVDDAV RRILRVKFTM GLFENPYADT GLAGELGKQE HRDLAREAVR 420 KSLVLLKNGK PGDRPLLPLP KKAHGSILVA GSHADDLGSQ CGGWTITWQG LTGNNLTAGT 480 TILDGIKRAV GPAGTDVVYA DNPDAGFARE NGARFDYAVV VVGEAPYAET AGDNTNLTIP 540 APGPAIIQNV CGSIRCVVVL VSGRPLVVEP YIDAVEALVA AWLPGTEGQG VADVLFGDYG 600 FTGKLSRTWF RSVEQLAMNA GDAHYDPLFP FGFGLETQPS MY* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 8.0e-36 | 43 | 627 | 629 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 5.0e-41 | 423 | 635 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 3.0e-76 | 59 | 467 | 420 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 2.0e-81 | 44 | 635 | 678 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 7.0e-85 | 60 | 386 | 333 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF07705.2 | 0 | 40 | 638 | 16 | 617 | Os02g0131400 [Oryza sativa Japonica Group] |
RefSeq | NP_001045791.1 | 0 | 40 | 638 | 44 | 645 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001051275.1 | 0 | 16 | 638 | 8 | 621 | Os03g0749300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451476.1 | 0 | 38 | 642 | 54 | 662 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
RefSeq | XP_002453253.1 | 0 | 26 | 642 | 27 | 658 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 41 | 640 | 5 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1x38_A | 0 | 41 | 640 | 5 | 602 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1lq2_A | 0 | 41 | 640 | 5 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 41 | 640 | 5 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 41 | 640 | 5 | 602 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |