Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023087m |
Family | AA5 |
Protein Properties | Length: 617 Molecular Weight: 66906.9 Isoelectric Point: 5.8396 |
Chromosome | Chromosome/Scaffold: 002644 Start: 9104 End: 10954 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 67 | 615 | 0 |
TGLTRVPPSGPLSKAAQDTVQVAAASGEGPVGEWTIVSENSGVSPMHMAVMRHGRAVMFDTSTTGRSLMRLPQDNCRTDPRAKEEGTMDCWAHSVEFDYN TGGLRPLKILTDTWCSSGAFDADGNLVQTGGYFEGDKVVRVLSPCETCDWLERPNSFAEGRWYATQQVLPDGRFIVFGGRRAFGYEFVPAPGRMNDKANY MPFLRQTTDDVENNLYPFVNLLPSGNLFLFANDRSVIFDYQAGKIVRELPKLAGGSRNYPASAMSALLPLDLRNATGDPEPMVIICGGALKTAFRFGENN TFKPALRDCARINLAAPGAQWETEDMPVGRVMGNMLILPTGDLLLLNGAAKGCSGWGFARQPILTPILYSPRKEQGSRFRALASSTISRMYHSTSAVLPD GSVLVAGGNTNAAYNFSGVDFPTEVRVERFSPPYLSKDRAGNRPRIDAASVPADGMRYGSPFTFRFSMPSEAVGQPDVKVTMYAPPFTTHGYSMNQRMLI LSVTTFTEEGRSYTVTVDAPGKPELAPRGYYLVFVVAKGLPSVAAWVKI |
Full Sequence |
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Protein Sequence Length: 617 Download |
MGSRAAAFAV AVLLLASPGE AFFDIFNIFS PRSDSDYFQN AFDGPEEQAA PVQTEQEEKG 60 AAPATATGLT RVPPSGPLSK AAQDTVQVAA ASGEGPVGEW TIVSENSGVS PMHMAVMRHG 120 RAVMFDTSTT GRSLMRLPQD NCRTDPRAKE EGTMDCWAHS VEFDYNTGGL RPLKILTDTW 180 CSSGAFDADG NLVQTGGYFE GDKVVRVLSP CETCDWLERP NSFAEGRWYA TQQVLPDGRF 240 IVFGGRRAFG YEFVPAPGRM NDKANYMPFL RQTTDDVENN LYPFVNLLPS GNLFLFANDR 300 SVIFDYQAGK IVRELPKLAG GSRNYPASAM SALLPLDLRN ATGDPEPMVI ICGGALKTAF 360 RFGENNTFKP ALRDCARINL AAPGAQWETE DMPVGRVMGN MLILPTGDLL LLNGAAKGCS 420 GWGFARQPIL TPILYSPRKE QGSRFRALAS STISRMYHST SAVLPDGSVL VAGGNTNAAY 480 NFSGVDFPTE VRVERFSPPY LSKDRAGNRP RIDAASVPAD GMRYGSPFTF RFSMPSEAVG 540 QPDVKVTMYA PPFTTHGYSM NQRMLILSVT TFTEEGRSYT VTVDAPGKPE LAPRGYYLVF 600 VVAKGLPSVA AWVKIM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 6.0e-26 | 509 | 615 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 4.0e-29 | 506 | 615 | 111 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 3.0e-120 | 112 | 354 | 246 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY98991.1 | 0 | 19 | 615 | 23 | 620 | hypothetical protein OsI_20949 [Oryza sativa Indica Group] |
RefSeq | NP_001043851.1 | 0 | 24 | 615 | 26 | 622 | Os01g0677000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056298.1 | 0 | 19 | 615 | 24 | 621 | Os05g0559000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148082.1 | 0 | 1 | 615 | 1 | 618 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002440240.1 | 0 | 1 | 615 | 1 | 619 | hypothetical protein SORBIDRAFT_09g028310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eib_A | 0.0000000000001 | 178 | 615 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 2eic_A | 0.0000000000002 | 178 | 615 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2vz3_A | 0.0000000000003 | 178 | 615 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2vz1_A | 0.0000000000003 | 178 | 615 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2jkx_A | 0.0000000000003 | 178 | 615 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |