Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023155m |
Family | GH3 |
Protein Properties | Length: 610 Molecular Weight: 66396.5 Isoelectric Point: 5.3661 |
Chromosome | Chromosome/Scaffold: 003660 Start: 13258 End: 16133 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 83 | 318 | 0 |
LASRLGVPILYGTDAVHGHNNVYGATVFPHNVGLGATRDAELARRIGEATALEVRATGIHWTFAPCVAVCRDPRWGRCYESYSEDPEIVRSLTTIVSGLQ GQLPADHPHGYPFLASVRENVLACAKHFVGDGGTDKGLNEGNAICSYEDLEAIHMTPYPDCIAQGVATVMASYSKWNGEPLHSSRYLLTDVLKGKLGFKG FVISDWEGIDRLCEHRGSDYRYCISQSVNAGMDMIM |
Full Sequence |
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Protein Sequence Length: 610 Download |
MAAPLYRDAS APVEARVRDL LARMTLREKA AQMAQIERGV ASPRALAELG AGSVLNAGGS 60 APRERASPAD WAAMVDGMQR HALASRLGVP ILYGTDAVHG HNNVYGATVF PHNVGLGATR 120 DAELARRIGE ATALEVRATG IHWTFAPCVA VCRDPRWGRC YESYSEDPEI VRSLTTIVSG 180 LQGQLPADHP HGYPFLASVR ENVLACAKHF VGDGGTDKGL NEGNAICSYE DLEAIHMTPY 240 PDCIAQGVAT VMASYSKWNG EPLHSSRYLL TDVLKGKLGF KGFVISDWEG IDRLCEHRGS 300 DYRYCISQSV NAGMDMIMIP HRFEKFLEDI VFLVETGEIP MSRIDDAVER ILRVKFISGV 360 FEHPFSDHSL LDIVGCKEHR LLAREAVRKS LVLLKNGKDQ KAPFLPLSKN AKRILVSGTH 420 ADDIGYQCGG WTIAWHGDSG KITLGTSILE AIQESLGVQT EVVYEKCPTE ATIENGDFSY 480 AVVVVGEVPY AEWTGDRTDL SIPFNGSELI SHVASKIPTL VVVISGRPLV IESQVLEKIE 540 ALVAAWLPGS EGMGITDCLF GDHDFVGKLP VTWYRSVDQL PINAGDANYD PLFPVGYGLK 600 MFQSDDDST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 7.0e-43 | 8 | 591 | 625 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-51 | 391 | 599 | 227 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 1.0e-88 | 1 | 599 | 673 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 2.0e-89 | 25 | 354 | 334 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 6.0e-98 | 24 | 455 | 449 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79317.1 | 0 | 12 | 605 | 13 | 606 | hypothetical protein OsI_20160 [Oryza sativa Indica Group] |
GenBank | EEE63918.1 | 0 | 12 | 605 | 13 | 606 | hypothetical protein OsJ_18743 [Oryza sativa Japonica Group] |
RefSeq | NP_001145784.1 | 0 | 2 | 609 | 9 | 619 | hypothetical protein LOC100279291 [Zea mays] |
RefSeq | NP_190284.1 | 0 | 5 | 600 | 9 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002279757.1 | 0 | 5 | 599 | 116 | 711 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 5 | 599 | 4 | 597 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1x38_A | 0 | 5 | 599 | 4 | 597 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1lq2_A | 0 | 5 | 599 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 5 | 599 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 5 | 599 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO800387 | 339 | 168 | 506 | 0 |
GO876678 | 318 | 232 | 549 | 0 |
JG937846 | 272 | 229 | 500 | 0 |
JG900118 | 274 | 322 | 595 | 0 |
GO876678 | 73 | 508 | 570 | 2.2 |
Sequence Alignments (This image is cropped. Click for full image.) |
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