Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023191m |
Family | GH3 |
Protein Properties | Length: 614 Molecular Weight: 66260.7 Isoelectric Point: 5.4669 |
Chromosome | Chromosome/Scaffold: 003571 Start: 15131 End: 18249 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 89 | 327 | 0 |
LSSRLGVPILYGTDAVHGHNNVYGATVFPHNVGLGAARDPELLRRIGVATALEVRATGIHWTFAPCVAVCRDPRWGRCYESYSEDMEVVRSLTTIVTGLQ GQPPADHPHGYPFLASVREKVLACAKHFVGDGGTDKGINEGNTICSYDDLERIHIAPYLDCTAQGVATVMASHSKWNGERLHSCRHLLTDVLKGKLGFKG FVISDWEGIDKLCEPRVAQGSDYQYCIKQSVNAGMDMIM |
Full Sequence |
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Protein Sequence Length: 614 Download |
MATAAHGDAM PLYKDASAPV ETRVRDLLGR MTLREKAAQM AQIERTVASA RALAELGAGS 60 VLNGGGSAPG DRSPACWTGM VDGMQRLALS SRLGVPILYG TDAVHGHNNV YGATVFPHNV 120 GLGAARDPEL LRRIGVATAL EVRATGIHWT FAPCVAVCRD PRWGRCYESY SEDMEVVRSL 180 TTIVTGLQGQ PPADHPHGYP FLASVREKVL ACAKHFVGDG GTDKGINEGN TICSYDDLER 240 IHIAPYLDCT AQGVATVMAS HSKWNGERLH SCRHLLTDVL KGKLGFKGFV ISDWEGIDKL 300 CEPRVAQGSD YQYCIKQSVN AGMDMIMIPY RFEEFLEDLV FLVETGEIPM SRIDDAVERI 360 LRVKFISGVF EHPFSDPSLL DIVGCKEHRL LAREAVRKSM VLLKNGKNQR EPFLPLATNV 420 KRILVTGTHA DDIGLQCGGW TVGWNGDSGK ITPGASILEA IKESMGVQTE VVYEACATEA 480 TIATGEFSYA VVVVGEVPYA ESAGDRSDLS IPFNGSDLIT RVASTIPTLV IVVSGRPLDI 540 ETQVLEKIDA LVAAWIPGTE GMGIADCLLG HHDFVGTLPV TWHGSVDQLP LNAGDANYDP 600 LFPVGYGLKM FEK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 9.0e-33 | 15 | 600 | 636 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 4.0e-46 | 400 | 608 | 227 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 7.0e-74 | 24 | 608 | 669 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 8.0e-77 | 32 | 363 | 336 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 2.0e-84 | 31 | 464 | 444 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79317.1 | 0 | 19 | 611 | 13 | 603 | hypothetical protein OsI_20160 [Oryza sativa Indica Group] |
GenBank | EEE63918.1 | 0 | 19 | 611 | 13 | 603 | hypothetical protein OsJ_18743 [Oryza sativa Japonica Group] |
RefSeq | NP_001145784.1 | 0 | 1 | 611 | 1 | 612 | hypothetical protein LOC100279291 [Zea mays] |
RefSeq | NP_190284.1 | 0 | 12 | 609 | 9 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002279757.1 | 0 | 12 | 613 | 116 | 716 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 12 | 608 | 4 | 597 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1iex_A | 0 | 12 | 608 | 4 | 597 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1iew_A | 0 | 12 | 608 | 4 | 597 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1iev_A | 0 | 12 | 608 | 4 | 597 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1ieq_A | 0 | 12 | 608 | 4 | 597 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO800387 | 341 | 175 | 515 | 0 |
GO876678 | 322 | 238 | 559 | 0 |
JG891890 | 245 | 370 | 614 | 0 |
HO784016 | 432 | 59 | 488 | 0 |
HO784016 | 48 | 13 | 60 | 0.003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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