| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00023264m |
| Family | GT47 |
| Protein Properties | Length: 431 Molecular Weight: 49175.6 Isoelectric Point: 10.058 |
| Chromosome | Chromosome/Scaffold: 003358 Start: 15974 End: 19055 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT47 | 57 | 353 | 0 |
| DLRIYVYSEDEIQGLRTLLRGRDGTVAAATCLKGQWGTQVKIHQFLLKSRFRTFNKDQANLFFVPSYVKCVRMTGALNDKEINQTYVKILSQMPYFRRSG GRDHIFVFPSGAGAHLFRSWATFLNRSIILTPEGDRTDKRGTSAFNTWKDIIIPGNVDDSMVKSDARAVQPIPLRKRKYLANFLGRAQGKAGRLQLVKLA KQYPDKLESPELKLSGPNKLGRMDYFKHLRNAKFCLAPRGESSWTLRFYESFFVECVPVILSDEVELPFQNVIDYSEISIKWPSSRIGELFEYLESI | |||
| Full Sequence |
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| Protein Sequence Length: 431 Download |
| MRHHHGCSRA HQVGALLLVA ATFLLTRLFD RLFLDASSPS SPSFPLSAAR PASPSADLRI 60 YVYSEDEIQG LRTLLRGRDG TVAAATCLKG QWGTQVKIHQ FLLKSRFRTF NKDQANLFFV 120 PSYVKCVRMT GALNDKEINQ TYVKILSQMP YFRRSGGRDH IFVFPSGAGA HLFRSWATFL 180 NRSIILTPEG DRTDKRGTSA FNTWKDIIIP GNVDDSMVKS DARAVQPIPL RKRKYLANFL 240 GRAQGKAGRL QLVKLAKQYP DKLESPELKL SGPNKLGRMD YFKHLRNAKF CLAPRGESSW 300 TLRFYESFFV ECVPVILSDE VELPFQNVID YSEISIKWPS SRIGELFEYL ESIPDERIEE 360 MIGRGREIRC LWVYAADTEP CSAMSGILSE LQRKVRRFHQ SPETFWLHNR SIVNRDLVEF 420 HSWRTPVPLP * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-46 | 60 | 353 | 299 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY93033.1 | 0 | 3 | 430 | 5 | 429 | hypothetical protein OsI_14833 [Oryza sativa Indica Group] |
| RefSeq | NP_001131485.1 | 0 | 1 | 430 | 1 | 426 | hypothetical protein LOC100192822 [Zea mays] |
| RefSeq | XP_002300942.1 | 0 | 3 | 430 | 15 | 460 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002307477.1 | 0 | 3 | 430 | 15 | 460 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458782.1 | 0 | 1 | 430 | 1 | 426 | hypothetical protein SORBIDRAFT_03g040220 [Sorghum bicolor] |
