Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00023272m |
Family | GT64 |
Protein Properties | Length: 349 Molecular Weight: 38609.3 Isoelectric Point: 10.8928 |
Chromosome | Chromosome/Scaffold: 002971 Start: 1877 End: 5671 |
Description | Nucleotide-diphospho-sugar transferases superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT64 | 94 | 340 | 0 |
FSVVINTWRRHALLRRSVAHYAACAGVEAVHVVWSEPRPPPETLRRGVLVNGTRRGTVRFEINEADSLNNRFRPIRSLGTDAVFSVDDDLIVPCSTLRFA FDVWQSAPSAMVGFVPRMHWLADPRGSTKEYRYGSWWSVWWTGTYSMVLSKASFFHRQYLDLYTNNMLPSIRKYVDENRNCEDIAMSFLVANHSGAPPIW VQGRIFEIGSTGISSLKGHSLQRSRCLNTFAAMYGHMPLVATTVKAV |
Full Sequence |
---|
Protein Sequence Length: 349 Download |
MPWMTKLLLQ LQAAAADRRH GLGLSLGFGP GRGRRHPQTP RHAPAAGRFS PATACLTLCL 60 LAVAAAATTL AVALHRQSPD PAAVAGPAAS PRGFSVVINT WRRHALLRRS VAHYAACAGV 120 EAVHVVWSEP RPPPETLRRG VLVNGTRRGT VRFEINEADS LNNRFRPIRS LGTDAVFSVD 180 DDLIVPCSTL RFAFDVWQSA PSAMVGFVPR MHWLADPRGS TKEYRYGSWW SVWWTGTYSM 240 VLSKASFFHR QYLDLYTNNM LPSIRKYVDE NRNCEDIAMS FLVANHSGAP PIWVQGRIFE 300 IGSTGISSLK GHSLQRSRCL NTFAAMYGHM PLVATTVKAV DSRRSWFW* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09258 | Glyco_transf_64 | 2.0e-102 | 94 | 340 | 252 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016758 | transferase activity, transferring hexosyl groups |
GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD53800.1 | 0 | 28 | 348 | 19 | 355 | putative Reg receptor [Oryza sativa Japonica Group] |
DDBJ | BAH01223.1 | 0 | 28 | 348 | 20 | 343 | unnamed protein product [Oryza sativa Japonica Group] |
GenBank | EAZ02288.1 | 0 | 4 | 348 | 1 | 351 | hypothetical protein OsI_24388 [Oryza sativa Indica Group] |
RefSeq | XP_002437555.1 | 0 | 1 | 348 | 1 | 355 | hypothetical protein SORBIDRAFT_10g029290 [Sorghum bicolor] |
RefSeq | XP_002526868.1 | 0 | 55 | 348 | 35 | 329 | Exostosin-2, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1on8_B | 8e-36 | 94 | 337 | 30 | 277 | A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 |
PDB | 1on8_A | 8e-36 | 94 | 337 | 30 | 277 | A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 |
PDB | 1on6_B | 8e-36 | 94 | 337 | 30 | 277 | A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 |
PDB | 1on6_A | 8e-36 | 94 | 337 | 30 | 277 | A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 |
PDB | 1omz_B | 8e-36 | 94 | 337 | 30 | 277 | A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EX368496 | 281 | 75 | 349 | 0 |
CR287603 | 199 | 151 | 349 | 0 |
EX355274 | 281 | 75 | 349 | 0 |
CN524714 | 260 | 96 | 349 | 0 |
CO073821 | 254 | 102 | 349 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|