Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023339m |
Family | CE8 |
Protein Properties | Length: 592 Molecular Weight: 63743.2 Isoelectric Point: 9.4254 |
Chromosome | Chromosome/Scaffold: 002443 Start: 10089 End: 14867 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 280 | 575 | 0 |
LVVAKDGSGNFTTVGEAVAAAPNNSEARFVIYIKAGGYFENVEVGPEKTNLMFVGDGMWKTVIKASRSVVDNSTTFRSATLAVVGTGFLARDLTVENAAG PKKHQAVALRVNADLAAFYRCSFVGYQDTLYAHSLRQFYRDCDVYGTVDFVFGDAAVVLQGCNLYARRPDPGQKNAVTAQGREDPNQNTGIVVQGGKVAA AADLIPVLANFSSYLGRPWKLYSRTVFAQTKMESLIHPRGWLEWNGSFALDTLYYAEYMNRGPGANTSARVAWPGYHVLTNATDAANFTVLNFIQG |
Full Sequence |
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Protein Sequence Length: 592 Download |
MPPRPKSAAV AKLPVPATFL SLALLLLPLG FLATHRTFSG GVAVSTSAAP AEERHREERV 60 LLAGGGNADA DAAAAEHAAA VDRHCGCTLH RDVCASTLAT IPNLAQKPLR DVISHVVARA 120 AAAVRASSSN CSSYLRRPQR LRVRDRLALS DCLELFGRTL GLLGTAADEL SAGNRTAEES 180 IAGVQTVLSA ALTNQYTCLD GFAGPSASGD GRVRPYIQGR IYHVAHLVSN SLAMVRRLPQ 240 HRRRGREALE GYGRVRRGFP SWVSEGDRRR LQQQQAVADL VVAKDGSGNF TTVGEAVAAA 300 PNNSEARFVI YIKAGGYFEN VEVGPEKTNL MFVGDGMWKT VIKASRSVVD NSTTFRSATL 360 AVVGTGFLAR DLTVENAAGP KKHQAVALRV NADLAAFYRC SFVGYQDTLY AHSLRQFYRD 420 CDVYGTVDFV FGDAAVVLQG CNLYARRPDP GQKNAVTAQG REDPNQNTGI VVQGGKVAAA 480 ADLIPVLANF SSYLGRPWKL YSRTVFAQTK MESLIHPRGW LEWNGSFALD TLYYAEYMNR 540 GPGANTSARV AWPGYHVLTN ATDAANFTVL NFIQGDLWLN ATSFPYTLGF S* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 3.0e-167 | 148 | 589 | 456 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 8.0e-169 | 148 | 589 | 447 | + pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 3.0e-170 | 148 | 589 | 467 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02933 | PLN02933 | 2.0e-170 | 148 | 590 | 449 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 284 | 576 | 293 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACQ85264.1 | 0 | 84 | 591 | 58 | 565 | pectin methylesterase [Musa acuminata AAA Group] |
GenBank | EEC82670.1 | 0 | 49 | 591 | 38 | 579 | hypothetical protein OsI_27314 [Oryza sativa Indica Group] |
RefSeq | NP_001060620.1 | 0 | 52 | 591 | 42 | 579 | Os07g0675100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002455538.1 | 0 | 84 | 590 | 48 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
RefSeq | XP_002463382.1 | 0 | 30 | 591 | 34 | 599 | hypothetical protein SORBIDRAFT_02g042780 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 279 | 590 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 277 | 590 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-23 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-23 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-23 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |