Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023354m |
Family | GT47 |
Protein Properties | Length: 500 Molecular Weight: 55251.9 Isoelectric Point: 7.388 |
Chromosome | Chromosome/Scaffold: 003176 Start: 533 End: 4518 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 132 | 426 | 0 |
RLKVFIYDLPRKYNKKMVTKDPRCLNHMFAAEIFMHRFLLSSAVRTLNPKEADWFYTPVYTTCDLTNAGLPLPFKSPRVMRSAIQYISNKWPFWNRTDGA DHFFVVPHDFAACFHYQEEKAIERGILPLLRRATLVQTFGQENHVCLKEGSIIIPPYAPPQKMQAHLISPDTPRSIFVYFRGLFYDTGNDPEGGYYARGA RASLWENFKSNPLFDISTDHPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVEEKDVPKLDTILTS |
Full Sequence |
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Protein Sequence Length: 500 Download |
MASARGMPKL VGLGTHPLSS LLSICPTKIS PLLSSSIPLP PLCRVPQIQS PREALLPSPL 60 EVETGAGVPS GMGSGAGWLP VALLLLAASV LSPRVAAAAA AAGGEAEHAV QQHSERISGS 120 AGDVLEDNPV GRLKVFIYDL PRKYNKKMVT KDPRCLNHMF AAEIFMHRFL LSSAVRTLNP 180 KEADWFYTPV YTTCDLTNAG LPLPFKSPRV MRSAIQYISN KWPFWNRTDG ADHFFVVPHD 240 FAACFHYQEE KAIERGILPL LRRATLVQTF GQENHVCLKE GSIIIPPYAP PQKMQAHLIS 300 PDTPRSIFVY FRGLFYDTGN DPEGGYYARG ARASLWENFK SNPLFDISTD HPATYYEDMQ 360 RAVFCLCPLG WAPWSPRLVE AVVFGCIPVI IADDIVLPFA DAIPWEEIGV FVEEKDVPKL 420 DTILTSMPID DILRKQRLLA NPSMKQAMLF PHPAQPRDAF HQILNGLARK LPHPEGTYLQ 480 PGDRHLNWTA GPVGDLKPW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 9.0e-85 | 132 | 427 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84255.1 | 0 | 72 | 499 | 1 | 427 | unknown [Zea mays] |
RefSeq | NP_001052673.1 | 0 | 103 | 499 | 24 | 420 | Os04g0398600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149267.1 | 0 | 104 | 499 | 32 | 427 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | XP_002446363.1 | 0 | 108 | 499 | 39 | 430 | hypothetical protein SORBIDRAFT_06g014730 [Sorghum bicolor] |
RefSeq | XP_002452172.1 | 0 | 76 | 499 | 6 | 432 | hypothetical protein SORBIDRAFT_04g021180 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO846508 | 325 | 176 | 500 | 0 |
GO872051 | 326 | 142 | 467 | 0 |
GT033383 | 310 | 191 | 500 | 0 |
GO868810 | 331 | 145 | 475 | 0 |
CK370882 | 289 | 166 | 454 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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