y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023691m |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 43846.4 Isoelectric Point: 8.1728 |
Chromosome | Chromosome/Scaffold: 002866 Start: 13914 End: 15424 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 403 | 0 |
WKAACASPRPAVLLVPGGGKRYLLSSVVKLSGPCRSASVTVTVQGTLVASPNRADWSGKDTRHWIVFRAVDGLTVSGGGVIDGNGEAWWKNSCKINKALP CKEAPTALSFHYCTSLRVQDLKIVNSQQIHMSIEDCSNVQVAGLSITAPGTSPNTDGIHITRSNDVQVTNCKIKTGDDCISIENGTHNLHVSQVVCGPGH GISIGSLGDDNSRAEVSGITIDSVQLYGTTNGARIKTYQGGSGYARDIAFQNMVMGGVRNPIIIDQNYCDKAKPCREQGSSAVEVSNVVFRNIRGTSTTK DAIKLSCSKNAPCHGITLQNIDLEMEGGNGAAESTCQNAR |
Full Sequence |
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Protein Sequence Length: 420 Download |
MASTKLQLVF LAPFLALLFS SGALGAAAAE TTNNGTAAAV GSLDSFGARG DGSHDDAPAL 60 ARAWKAACAS PRPAVLLVPG GGKRYLLSSV VKLSGPCRSA SVTVTVQGTL VASPNRADWS 120 GKDTRHWIVF RAVDGLTVSG GGVIDGNGEA WWKNSCKINK ALPCKEAPTA LSFHYCTSLR 180 VQDLKIVNSQ QIHMSIEDCS NVQVAGLSIT APGTSPNTDG IHITRSNDVQ VTNCKIKTGD 240 DCISIENGTH NLHVSQVVCG PGHGISIGSL GDDNSRAEVS GITIDSVQLY GTTNGARIKT 300 YQGGSGYARD IAFQNMVMGG VRNPIIIDQN YCDKAKPCRE QGSSAVEVSN VVFRNIRGTS 360 TTKDAIKLSC SKNAPCHGIT LQNIDLEMEG GNGAAESTCQ NARWRKAGTV LPQPCTSQN* 420 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-94 | 46 | 419 | 374 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-110 | 45 | 416 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-111 | 68 | 402 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-134 | 46 | 419 | 374 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-139 | 43 | 413 | 373 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 19 | 419 | 27 | 442 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 42 | 417 | 94 | 478 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 16 | 415 | 23 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 20 | 418 | 40 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 40 | 419 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 138 | 386 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-21 | 21 | 392 | 3 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-18 | 103 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 103 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 103 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |