y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00023724m |
Family | GH28 |
Protein Properties | Length: 677 Molecular Weight: 70930.7 Isoelectric Point: 9.7549 |
Chromosome | Chromosome/Scaffold: 003509 Start: 9658 End: 12035 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 290 | 631 | 0 |
KAACSSSSAAATLLVPSDGVFTITSTIFAGPCKSALTFQIDGVLMPPDGPASWPAADSRRQWLVFYRADGVTLAGKGTIEGNGEEWWDLPCKPHRGPNGS TLPGPCDSPAVSSRRPTTWIWIYLAVFLLSKPLASPCWRCLPQLVRFVLSNDVTVRGLRIENSPQFHLKFDGCARVLVDGLFVSSPAFSPNTDGVHVENT TAVQILNSRIYNGHGISIGSLGVHNTRACVSNVTVRNARIVDSDNGLRIKTWQGGAGAVSAVEFAGVRVQNVRSCIVIDQYYCLGSGCANQTSAVRVDGV AYRDIRGTYNPRASAPIRLACSDAVACTGIAMSDVELLPAGG |
Full Sequence |
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Protein Sequence Length: 677 Download |
LCCHPVAAED ASRALHYHRK QRRHHSRHHR AENGGGHIAL PPAPALPPDV DGDSPAEPPG 60 LPPDAGDARR RHHKSCCPPS RPPTSVAPLG APAPAPAKPP PNKATEPRSR AKPPSMPPAK 120 PPSLSPARPP SHSPRKPPSL SPSHAKPTPC SPAKSKPPMP SPARPPRLSP ASPSAHPPAK 180 TSNRAPAQTP RPSPAKPQPP VPSTVKPPPL APAKPPTPSP AQPPRPSPAN PPTAPTVTAK 240 PPALPPAMSK PTPPLPPAKD SSSAVFDVRA FGASGNASGD DTRAFRAAWK AACSSSSAAA 300 TLLVPSDGVF TITSTIFAGP CKSALTFQID GVLMPPDGPA SWPAADSRRQ WLVFYRADGV 360 TLAGKGTIEG NGEEWWDLPC KPHRGPNGST LPGPCDSPAV SSRRPTTWIW IYLAVFLLSK 420 PLASPCWRCL PQLVRFVLSN DVTVRGLRIE NSPQFHLKFD GCARVLVDGL FVSSPAFSPN 480 TDGVHVENTT AVQILNSRIY NGHGISIGSL GVHNTRACVS NVTVRNARIV DSDNGLRIKT 540 WQGGAGAVSA VEFAGVRVQN VRSCIVIDQY YCLGSGCANQ TSAVRVDGVA YRDIRGTYNP 600 RASAPIRLAC SDAVACTGIA MSDVELLPAG GGGAGARLAE PFCWNAYGVM ETLTEPPVYC 660 LQEGRPDSLQ DQLTSC* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-42 | 261 | 662 | 429 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-45 | 259 | 626 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-60 | 268 | 626 | 386 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-68 | 301 | 626 | 349 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-80 | 251 | 657 | 431 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001132604.2 | 0.003 | 1 | 68 | 34 | 95 | hypothetical protein LOC100194076 [Zea mays] |
RefSeq | NP_001132604.2 | 0 | 243 | 676 | 69 | 502 | hypothetical protein LOC100194076 [Zea mays] |
RefSeq | XP_002455572.1 | 0 | 1 | 676 | 4 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
RefSeq | XP_002455574.1 | 0 | 258 | 676 | 109 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.0000000000003 | 444 | 626 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000003 | 444 | 626 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000003 | 444 | 626 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000003 | 444 | 626 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.0000000000003 | 444 | 626 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY254539 | 329 | 341 | 646 | 0 |
DW479564 | 360 | 273 | 606 | 0 |
DY277859 | 392 | 260 | 627 | 0 |
DV135481 | 322 | 275 | 573 | 0 |
ES849368 | 328 | 314 | 617 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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