Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00023750m |
Family | CBM43 |
Protein Properties | Length: 501 Molecular Weight: 53287.5 Isoelectric Point: 5.4944 |
Chromosome | Chromosome/Scaffold: 002525 Start: 12875 End: 16584 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 365 | 446 | 2.2e-31 |
CVAREDADPKMLQAALDWACGPGKVDCSALTQGQPCYEPDTVEAHATYAFNAYYHGMGMGSGTCYFSGVAVITTTDPSHGSC | |||
GH17 | 26 | 346 | 0 |
IGVNIGTAMSSVPAPTQITTLLRSQNIRHVRLYDADRAMLAALANTGIRVIVSVPNEQLLAIGNSNATAANWVARNVAAHFPAVNITAIAVGSEVLSAQA NAAPLLMPAMRYLQNALVAAALDRYIKISTPHSSSIILDSFPPSQAFFNRSLDNVLVPMLKFLQSTGSPLMLNVYPYYDYMRSNGVIPLDYALFRPLPPN KEAVDANTLLHYTNVFDAVVDAAYFAMSYLNVTNVPVMVTETGWPHKGDPSSEPDATAENADTYNSNLIRHVMNSTGTPKHPGVAVPTFIYELYDEDTRP GSTSEKYWGLFDMNGVPAYTL |
Full Sequence |
---|
Protein Sequence Length: 501 Download |
MNKLLLVFFL FLLGVAAVHG EDGAYIGVNI GTAMSSVPAP TQITTLLRSQ NIRHVRLYDA 60 DRAMLAALAN TGIRVIVSVP NEQLLAIGNS NATAANWVAR NVAAHFPAVN ITAIAVGSEV 120 LSAQANAAPL LMPAMRYLQN ALVAAALDRY IKISTPHSSS IILDSFPPSQ AFFNRSLDNV 180 LVPMLKFLQS TGSPLMLNVY PYYDYMRSNG VIPLDYALFR PLPPNKEAVD ANTLLHYTNV 240 FDAVVDAAYF AMSYLNVTNV PVMVTETGWP HKGDPSSEPD ATAENADTYN SNLIRHVMNS 300 TGTPKHPGVA VPTFIYELYD EDTRPGSTSE KYWGLFDMNG VPAYTLHLTG SGVLLANDTT 360 NQTYCVARED ADPKMLQAAL DWACGPGKVD CSALTQGQPC YEPDTVEAHA TYAFNAYYHG 420 MGMGSGTCYF SGVAVITTTD PSHGSCVYAG KNGSALLNGT SLAPSSNSTE GGSGAHRAVG 480 DVSALARIVS AALLLSVLLL * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-7 | 258 | 336 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-19 | 363 | 435 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-40 | 363 | 448 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-82 | 26 | 346 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN30650.1 | 0 | 1 | 489 | 1 | 489 | unknown [Zea mays] |
RefSeq | NP_001049413.1 | 0 | 1 | 487 | 1 | 490 | Os03g0221500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130376.1 | 0 | 1 | 492 | 1 | 492 | hypothetical protein LOC100191471 [Zea mays] |
RefSeq | NP_001150141.1 | 0 | 19 | 489 | 19 | 489 | glucan endo-1,3-beta-glucosidase 3 [Zea mays] |
RefSeq | XP_002468258.1 | 0 | 1 | 492 | 1 | 492 | hypothetical protein SORBIDRAFT_01g042560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 26 | 349 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 26 | 349 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 26 | 349 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 26 | 349 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |