| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00023932m |
| Family | PL4 |
| Protein Properties | Length: 669 Molecular Weight: 73128.1 Isoelectric Point: 6.1653 |
| Chromosome | Chromosome/Scaffold: 002629 Start: 7621 End: 10511 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 39 | 649 | 0 |
| ADDPTQVVVDNGVVQVSLYRLQGQITGVRYGGGGGGQNLLQYDASQRNSGGYWDVVWNYPGSNRPGTMDMLDGTEFQVVSSTEEQVELSFRSSYNASRPN SLRLNVDKRLVMLRGSSGFYCYAIFEHAPEYPALNVSVARLAFKLNAAMFNYMAISDDIQRYMPSAADRDPPRGVPLAYKEAVLLVDPVEPEFRGEVDDK YQYALDNQDNLVHGWIGGGGGDPASAAATGFWVVTPSNEFKNGGPLKRELTSHTGPTSLAVFLGPHYVGRDMVIQFEEGESWKKVLGPVFIYLNSGDHPS CKRDLWEDAKARARAEVSRWPYTFPASPDFAKACERGSVTGRLWVRDDVANAKQQQQPAAMAYVGLAAPGQPGSWARESKRYQFWTRATSDGRFSIGNVR GGVYNLYAWVPGVLGDYMHASSVTVTPACAVNAGDLVFEPPRSGPTLWEIGVPDRSAAELHVSDPDPRYASRLFLARDRYRQYGLWERYAALYPDGDLVF TVGESNHSRDWFFAHGTVVPTTWQIRFHLDGVVAGGTYTLRIALAASHMASLQVRVNGGDGAPPSPALLMGDNNAIARHGIRGTEWSLDFGIEGRLLNQG DNTIHITQASA | |||
| Full Sequence |
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| Protein Sequence Length: 669 Download |
| MAAAPRWCLQ LAVRASLLVL LLAADAPPPQ AGGAVTLHAD DPTQVVVDNG VVQVSLYRLQ 60 GQITGVRYGG GGGGQNLLQY DASQRNSGGY WDVVWNYPGS NRPGTMDMLD GTEFQVVSST 120 EEQVELSFRS SYNASRPNSL RLNVDKRLVM LRGSSGFYCY AIFEHAPEYP ALNVSVARLA 180 FKLNAAMFNY MAISDDIQRY MPSAADRDPP RGVPLAYKEA VLLVDPVEPE FRGEVDDKYQ 240 YALDNQDNLV HGWIGGGGGD PASAAATGFW VVTPSNEFKN GGPLKRELTS HTGPTSLAVF 300 LGPHYVGRDM VIQFEEGESW KKVLGPVFIY LNSGDHPSCK RDLWEDAKAR ARAEVSRWPY 360 TFPASPDFAK ACERGSVTGR LWVRDDVANA KQQQQPAAMA YVGLAAPGQP GSWARESKRY 420 QFWTRATSDG RFSIGNVRGG VYNLYAWVPG VLGDYMHASS VTVTPACAVN AGDLVFEPPR 480 SGPTLWEIGV PDRSAAELHV SDPDPRYASR LFLARDRYRQ YGLWERYAAL YPDGDLVFTV 540 GESNHSRDWF FAHGTVVPTT WQIRFHLDGV VAGGTYTLRI ALAASHMASL QVRVNGGDGA 600 PPSPALLMGD NNAIARHGIR GTEWSLDFGI EGRLLNQGDN TIHITQASAL NQFVGVMYDY 660 IRLEGPSM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-26 | 373 | 474 | 102 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 5.0e-50 | 486 | 664 | 180 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-54 | 75 | 339 | 269 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-77 | 60 | 235 | 176 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 28 | 667 | 41 | 690 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 28 | 668 | 41 | 691 | Os12g0131900 [Oryza sativa Japonica Group] |
| GenBank | EEC68814.1 | 0 | 28 | 667 | 41 | 647 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
| RefSeq | NP_001066077.1 | 0 | 28 | 667 | 41 | 677 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441644.1 | 0 | 2 | 667 | 3 | 721 | hypothetical protein SORBIDRAFT_09g030850 [Sorghum bicolor] |
