| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00024100m |
| Family | GH3 |
| Protein Properties | Length: 789 Molecular Weight: 83804.7 Isoelectric Point: 9.2035 |
| Chromosome | Chromosome/Scaffold: 002270 Start: 2939 End: 6605 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH3 | 91 | 345 | 0 |
| VPRLGVPGYKWWNEALHGVAISGKGIHLDQGAVRSATSFPQVLLTAAAFNDNLWFRIGQATGREARALYNIGQAEGLAMWSPNVNIFRDPRWGRGQETPG EDPAVASRYAAAFVRGLQGSASNSRSAPPSVLLTSACCKHATAYDLEDWKGVSRYSFKATVTAQDLADTFNPPFQSCVVEGRASCLMCAYTSVNGVPNCA NADLLTKTFRNSWGLDGYVAADCDAVAIMRNSQFYRPTAEDTVAATLKAGLDIDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 789 Download |
| MDRHQNCGMA VLAGGAAAAL RLLAAVAVVP ALLAGPAAAG APPFSCGPSS PSRALPFCNA 60 KLPAAQRAAD LVSRMTPAEK VSQLGDISPG VPRLGVPGYK WWNEALHGVA ISGKGIHLDQ 120 GAVRSATSFP QVLLTAAAFN DNLWFRIGQA TGREARALYN IGQAEGLAMW SPNVNIFRDP 180 RWGRGQETPG EDPAVASRYA AAFVRGLQGS ASNSRSAPPS VLLTSACCKH ATAYDLEDWK 240 GVSRYSFKAT VTAQDLADTF NPPFQSCVVE GRASCLMCAY TSVNGVPNCA NADLLTKTFR 300 NSWGLDGYVA ADCDAVAIMR NSQFYRPTAE DTVAATLKAG LDIDCGPYIQ QYATAAIQKG 360 KLTQQDVDKA LKNLFTTRMR LGHFDGDPKA GVYGNLGAAQ ICTPEHKNLA LEAALDGIVL 420 LKNGAGVLPL KRGAVASAAV IGHNANDVLA LLGNYWGPPC APTTPLQGIQ GFVKNVMFLA 480 GCNTAACNAA ATPQAAVLAS SSDEVILFMG LSQQQECEGK DRTSLLLPGN QQSLITAVAN 540 AAKRPVILVL LTGGPVDITF AQSNPKIGAI LWAGYPGQAG GLAIAKVLFG EKNPSGKLPV 600 TWYPEEFTKI PMTDMRMRAA AGYPGRTYRF YNGKTIYKFG HGLSYSKFSH RLVTGRKNPV 660 HNTSLLAAGQ TATTEDNTGY HVDHIGDEVC DQLKFPAVVK VKNHGPMDGK HTALMFLRWP 720 NATDGRPARQ LVGFQSQHIK AGEKAHLRFQ VSPCEHFSRV RRDGRKVIDK GSHFLNVGKH 780 EVEISFGA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 4.0e-45 | 89 | 447 | 367 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-56 | 418 | 646 | 235 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 5.0e-57 | 76 | 374 | 328 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 3.0e-65 | 56 | 753 | 777 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 44 | 786 | 753 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX96800.1 | 0 | 42 | 786 | 109 | 851 | Glycosyl hydrolase family 3 C terminal domain, putative [Oryza sativa Japonica Group] |
| RefSeq | NP_001067726.1 | 0 | 42 | 788 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002489304.1 | 0 | 28 | 788 | 3 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
| RefSeq | XP_002489310.1 | 0 | 39 | 788 | 23 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
| RefSeq | XP_002489311.1 | 0 | 23 | 788 | 28 | 791 | hypothetical protein SORBIDRAFT_0010s012040 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 170 | 753 | 128 | 698 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u48_A | 0 | 170 | 753 | 128 | 698 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_B | 0 | 170 | 753 | 128 | 698 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_A | 0 | 170 | 753 | 128 | 698 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3zz1_A | 1e-31 | 126 | 784 | 72 | 704 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
