y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00024113m |
Family | GT47 |
Protein Properties | Length: 416 Molecular Weight: 46511.6 Isoelectric Point: 6.6685 |
Chromosome | Chromosome/Scaffold: 003769 Start: 4085 End: 6679 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 48 | 343 | 0 |
RLKVFVYDLPSKYNKKLLKKDPRCLNHMFAAEIFMHWFLLSSAVRTFNPEEADWFYTPVYTTCDLTPSGLPLPFKSPRMMRSAIQLIATNWPYWNRSEGA DHFFVTPHDFGACFHYQEEKAIARGILPLLQRATLVQTFGQKNHVCLKDGSITIPPFAPPQKMQTHLIPPDTPRSIFVYFRGLFYDNGNDPEGGYYARGA RASVWENFKNNPLFDISTDHPPTYYEDMQRSVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVAEEDVPRLDSILTSI |
Full Sequence |
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Protein Sequence Length: 416 Download |
MGKGSGRGLA LALAVLLACS GVVVVTAQDT ERIEGSAGDV LEDNPVGRLK VFVYDLPSKY 60 NKKLLKKDPR CLNHMFAAEI FMHWFLLSSA VRTFNPEEAD WFYTPVYTTC DLTPSGLPLP 120 FKSPRMMRSA IQLIATNWPY WNRSEGADHF FVTPHDFGAC FHYQEEKAIA RGILPLLQRA 180 TLVQTFGQKN HVCLKDGSIT IPPFAPPQKM QTHLIPPDTP RSIFVYFRGL FYDNGNDPEG 240 GYYARGARAS VWENFKNNPL FDISTDHPPT YYEDMQRSVF CLCPLGWAPW SPRLVEAVVF 300 GCIPVIIADD IVLPFADAIP WEEIGVFVAE EDVPRLDSIL TSIPTDVILR KQRLLANPSM 360 KQAMLFPQPA QPGDAFHQIL NGLARKLPHG DNVFLKPGER ILNWTAGPPG DLKPW* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 8.0e-86 | 48 | 343 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001045264.1 | 0 | 24 | 415 | 26 | 417 | Os01g0926700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130448.1 | 0 | 1 | 415 | 1 | 415 | hypothetical protein LOC100191546 [Zea mays] |
RefSeq | NP_001150738.1 | 0 | 1 | 415 | 1 | 415 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | XP_002440184.1 | 0 | 1 | 415 | 1 | 415 | hypothetical protein SORBIDRAFT_09g027440 [Sorghum bicolor] |
RefSeq | XP_002459017.1 | 0 | 27 | 415 | 32 | 420 | hypothetical protein SORBIDRAFT_03g044530 [Sorghum bicolor] |