Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00024398m |
Family | PL1 |
Protein Properties | Length: 446 Molecular Weight: 49333.4 Isoelectric Point: 10.133 |
Chromosome | Chromosome/Scaffold: 002745 Start: 2687 End: 4206 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 365 | 0 |
IIFARSMIIELTQELLVSSDKTIDGRGAQVHIANGGGITVQFARNVIIHNLHVHDVKHTLGGMMRDSPTHTGPRTKADGDGISLFGATNVWIDHISMSNC EDGLVDVVQSSTGVTISNCHFTNHNDVMLFGASDSYPQDQVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNAPAIISQGNRYIA |
Full Sequence |
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Protein Sequence Length: 446 Download |
MEQRLRWRHP GSLVVVAAAF LASAAVSSAG IAVLDEHWQK RKELAEASAR EAYRPDPYNV 60 TNSFNIAVHR ATSLRREMGE KKKKKKKSKS GGPCKATNPI DKCWRCRKDW ATDRQRMARC 120 ARGFGHLATG GLGGRIYVVT DPGDADVLNP RPGTLRWGAI QTGPLWIIFA RSMIIELTQE 180 LLVSSDKTID GRGAQVHIAN GGGITVQFAR NVIIHNLHVH DVKHTLGGMM RDSPTHTGPR 240 TKADGDGISL FGATNVWIDH ISMSNCEDGL VDVVQSSTGV TISNCHFTNH NDVMLFGASD 300 SYPQDQVMQI TVAFNHFGRG LVQRMPRCRW GFFHVVNNDY THWLMYAIGG SNAPAIISQG 360 NRYIAPPNMA AKVITKHYAD EGVWKNWVWH TENDLFMNGA IFQPSGGAVP RKVKKDEWVK 420 PKPGSYVTRL VRFSGTLECR PGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 0.003 | 166 | 292 | 137 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
pfam04431 | Pec_lyase_N | 4.0e-15 | 30 | 78 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-33 | 180 | 361 | 194 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-71 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-77 | 173 | 367 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 4 | 445 | 6 | 444 | unknown [Zea mays] |
GenBank | EAY85003.1 | 0 | 2 | 445 | 3 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
RefSeq | NP_001046281.1 | 0 | 2 | 445 | 3 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437204.1 | 0 | 2 | 445 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 3 | 445 | 6 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-25 | 129 | 413 | 22 | 265 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000004 | 157 | 376 | 102 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000002 | 179 | 363 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |