Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00024525m |
Family | CE8 |
Protein Properties | Length: 400 Molecular Weight: 43609 Isoelectric Point: 4.9769 |
Chromosome | Chromosome/Scaffold: 002692 Start: 12280 End: 13834 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 93 | 385 | 0 |
CVDPNGCCDFTTVQAAVNAVPNHSRKRNVVWINKGIYFEKVTVPASKPNITFQGQGFDITAIAWNDTAKSANGTFYSASVSIFASGFIAKNISFINVAPI PRPGAVDAQAVAIRINGDQAAFWGCGFFGAQDTLCDDRGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPVPSGQRSITGSVTAHGRVSEDDNTGY SFVKCSIGGTGWIWLGRAWRPYSRVVFAYTSMSDIIASEGWNDWNDPSRDQTVFYGEYKCTGDGANLADRVPYAQKLSDVQVLPYLSTSFIDG |
Full Sequence |
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Protein Sequence Length: 400 Download |
MITQINGAAA AVVAAFLVFS THLYFPTTAH LYCPATPLPQ GLSDLTEPSF PFCPLTGSSV 60 CNDHQYGCKY NPLCDDFPPD FPPPDTPMVT VFCVDPNGCC DFTTVQAAVN AVPNHSRKRN 120 VVWINKGIYF EKVTVPASKP NITFQGQGFD ITAIAWNDTA KSANGTFYSA SVSIFASGFI 180 AKNISFINVA PIPRPGAVDA QAVAIRINGD QAAFWGCGFF GAQDTLCDDR GRHYFKECFI 240 QGSIDFIFGD ARSLYENCRL ISIADPVPSG QRSITGSVTA HGRVSEDDNT GYSFVKCSIG 300 GTGWIWLGRA WRPYSRVVFA YTSMSDIIAS EGWNDWNDPS RDQTVFYGEY KCTGDGANLA 360 DRVPYAQKLS DVQVLPYLST SFIDGDQWLK PYRDSLISA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-98 | 91 | 390 | 308 | + pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-108 | 89 | 391 | 310 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-119 | 94 | 391 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-129 | 101 | 391 | 297 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 26 | 394 | 379 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 73 | 390 | 71 | 388 | Pectinesterase [Medicago truncatula] |
GenBank | EEC83093.1 | 0 | 1 | 399 | 1 | 394 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 42 | 399 | 160 | 519 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002445213.1 | 0 | 1 | 399 | 3 | 399 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
RefSeq | XP_002521065.1 | 0 | 73 | 392 | 75 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 93 | 390 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99993e-41 | 93 | 390 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-16 | 102 | 383 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-16 | 102 | 383 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-16 | 102 | 383 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |